API for sumFREGAT
Fast Region-Based Association Tests on Summary Statistics
| Global functions | |
|---|---|
| ACAT | Man page |
| ACATO | Man page Source code |
| BT | Man page |
| FLM | Man page |
| Get_Lambda | Source code |
| Get_Liu_PVal.MOD | Source code |
| Get_Liu_PVal.MOD.Lambda | Source code |
| Get_Liu_PVal.MOD.Lambda.Zero | Source code |
| Get_Liu_Params | Source code |
| Get_Liu_Params_Mod | Source code |
| Get_Liu_Params_Mod_Lambda | Source code |
| Get_PValue.Lambda | Source code |
| Indep.Variants | Source code |
| KAT.pval | Source code |
| Lfd | Source code |
| Liu.pval | Source code |
| Liu.qval.mod | Source code |
| PC | Source code |
| PCA | Man page |
| SKAT | Man page |
| SKATO | Man page |
| SKAT_Optiaml_Each_Q | Source code |
| SKAT_Optimal_Get_Pvalue | Source code |
| SKAT_Optimal_Integrate_Func_Davies | Source code |
| SKAT_Optimal_Integrate_Func_Kuonen | Source code |
| SKAT_Optimal_Integrate_Func_Liu | Source code |
| SKAT_Optimal_PValue_Davies_Kuonen | Source code |
| SKAT_Optimal_PValue_Liu | Source code |
| SKAT_Optimal_Param | Source code |
| Sadd.pval | Source code |
| basisfd | Source code |
| check.basis | Source code |
| check.input | Source code |
| check.method | Source code |
| check.rho | Source code |
| check.spec.FLM | Source code |
| check.spec.SKAT | Source code |
| check.sumstat | Source code |
| check.weights | Source code |
| create.constant.basis | Source code |
| davies | Source code |
| derivLH | Source code |
| detect.cor.file.ext | Source code |
| eval.basis | Source code |
| eval.fd | Source code |
| fd2list | Source code |
| fdchk | Source code |
| fitted.fdSmooth | Source code |
| fourier | Source code |
| genewise | Source code |
| get.check.list | Source code |
| get.sumstat | Source code |
| getbasismatrix | Source code |
| inprod | Source code |
| inprod.bspline | Source code |
| int2Lfd | Source code |
| integrateNEW | Source code |
| is.eqbasis | Source code |
| knotmultchk | Source code |
| minp | Man page |
| numberPCA | Source code |
| pchisqsum | Source code |
| polyprod | Source code |
| ppBspline | Source code |
| ppderiv | Source code |
| predict.fd | Source code |
| predict.fdPar | Source code |
| predict.fdSmooth | Source code |
| prep.score.files | Man page Source code |
| rangechk | Source code |
| read.vcf.info | Source code |
| reference_sample | Source code |
| residuals.fdSmooth | Source code |
| saddle | Source code Source code |
| search.subregions | Source code |
| simpleM | Man page |
| sumFREGAT-package | Man page |
| sumSTAAR | Man page Source code |
| sumchi | Man page |
| sumstat.ACAT | Source code |
| sumstat.BT | Source code |
| sumstat.FLM | Source code |
| sumstat.PCA | Source code |
| sumstat.SKAT | Source code |
| sumstat.SKATO | Source code |
| sumstat.flipper | Source code |
| sumstat.minp | Source code |
| sumstat.simpleM | Source code |
