API for sumFREGAT
Fast Region-Based Association Tests on Summary Statistics

Global functions
BT Man page
FLM Man page
Get_Lambda Source code
Get_Liu_PVal.MOD Source code
Get_Liu_PVal.MOD.Lambda Source code
Get_Liu_PVal.MOD.Lambda.Zero Source code
Get_Liu_Params Source code
Get_Liu_Params_Mod Source code
Get_Liu_Params_Mod_Lambda Source code
Get_PValue.Lambda Source code
Indep.Variants Source code
KAT.pval Source code
Lfd Source code
Liu.pval Source code
Liu.qval.mod Source code
MLR Man page
PC Source code
PCA Man page
SKAT Man page
SKATO Man page
SKAT_Optiaml_Each_Q Source code
SKAT_Optimal_Get_Pvalue Source code
SKAT_Optimal_Integrate_Func_Davies Source code
SKAT_Optimal_Integrate_Func_Kuonen Source code
SKAT_Optimal_Integrate_Func_Liu Source code
SKAT_Optimal_PValue_Davies_Kuonen Source code
SKAT_Optimal_PValue_Liu Source code
SKAT_Optimal_Param Source code
Sadd.pval Source code
basisfd Source code
check.basis Source code
check.input Source code
check.method Source code
check.rho Source code
check.spec.FLM Source code
check.spec.SKAT Source code
check.sumstat Source code
check.weights Source code
create.constant.basis Source code
davies Source code
derivLH Source code
detect.cor.file.ext Source code
eval.basis Source code
eval.fd Source code
fd2list Source code
fdchk Source code
fitted.fdSmooth Source code
fourier Source code
genewise Source code
get.check.list Source code
get.sumstat Source code
getbasismatrix Source code
inprod Source code
inprod.bspline Source code
int2Lfd Source code
integrateNEW Source code
is.eqbasis Source code
knotmultchk Source code
minp Man page
numberPCA Source code
pchisqsum Source code
polyprod Source code
ppBspline Source code
ppderiv Source code
predict.fd Source code
predict.fdPar Source code
predict.fdSmooth Source code
prep.score.files Man page Source code
rangechk Source code
read.vcf.info Source code
reference_sample Source code
residuals.fdSmooth Source code
saddle Source code Source code
search.subregions Source code
simpleM Man page
sumFREGAT-package Man page
sumchi Man page
sumstat.BT Source code
sumstat.FLM Source code
sumstat.MLR Source code
sumstat.PCA Source code
sumstat.SKAT Source code
sumstat.SKATO Source code
sumstat.flipper Source code
sumstat.minp Source code
sumstat.simpleM Source code
sumFREGAT documentation built on May 2, 2019, 5:52 a.m.