Description Usage Arguments Details Value Author(s) See Also
Computes specificity matrix for biclusters in two bicluster sets
1 | specificityMat(x, y, type=c("rows", "cols", "both"))
|
x |
BiclustSet object containing row and column indicators of bicluster membership, number of biclusters |
y |
BiclustSet object containing row and column indicators of bicluster membership, number of biclusters |
type |
whether to compute specificity in two dimensions, row dimension or column dimension |
This function operates on BiclustSet objects and computes pairwise similarity based on the common elements between biclusters. Sensitivity inclusion score spe of biclusters A and B is computed as
spe=\frac{|A\cap B|}{|B|}
matrix of pairwise specificities
Tatsiana Khamiakova
similarity
,jaccardMat
, ochiaiMat
, kulczynskiMat
,
sensitivityMat
,sorensenMat
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