sybilcycleFreeFlux: Cycle-Free Flux Balance Analysis

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Implement cycle-Free flux balance analysis, flux variability, and Random Sampling of solution space. Flux balance analysis is a technique to find fluxes in metabolic models at steady state. It is described in Orth, J.D., Thiele, I. and Palsson, B.O. What is flux balance analysis? Nat. Biotech. 28, 245-248 (2010).

Author
Abdelmoneim Amer Desouki [aut, cre]
Date of publication
2016-06-01 14:11:13
Maintainer
Abdelmoneim Amer Desouki <abdelmoneim.amer@uni-duesseldorf.de>
License
GPL-3
Version
2.0.0

View on CRAN

Man pages

ACHR
Random Sampling of Solution Space
cfFBA
cycle free flux
cfFVA
cycle free flux variability
enumerateCycles
function to enumerate cycles
getModel_WW
based on the algorithm given in Wright & Wagner 2008
iAF1260
Escherichia coli Metabolic Model iAF1260
iMM904
Saccharomyces cerevisiae Metabolic Model
llFBA
looplessFBA
sybilcycleFreeFlux-package
Find flux distribution free of cycles

Files in this package

sybilcycleFreeFlux
sybilcycleFreeFlux/NAMESPACE
sybilcycleFreeFlux/NEWS
sybilcycleFreeFlux/data
sybilcycleFreeFlux/data/iAF1260.RData
sybilcycleFreeFlux/data/iMM904.RData
sybilcycleFreeFlux/R
sybilcycleFreeFlux/R/llFBA.r
sybilcycleFreeFlux/R/enumerateCycles.r
sybilcycleFreeFlux/R/cfFBA.R
sybilcycleFreeFlux/R/ACHR.R
sybilcycleFreeFlux/R/getModel_WW.R
sybilcycleFreeFlux/R/cfFVA.R
sybilcycleFreeFlux/R/zzz.R
sybilcycleFreeFlux/MD5
sybilcycleFreeFlux/DESCRIPTION
sybilcycleFreeFlux/man
sybilcycleFreeFlux/man/cfFBA.Rd
sybilcycleFreeFlux/man/ACHR.Rd
sybilcycleFreeFlux/man/enumerateCycles.Rd
sybilcycleFreeFlux/man/llFBA.Rd
sybilcycleFreeFlux/man/getModel_WW.Rd
sybilcycleFreeFlux/man/sybilcycleFreeFlux-package.Rd
sybilcycleFreeFlux/man/iAF1260.Rd
sybilcycleFreeFlux/man/iMM904.Rd
sybilcycleFreeFlux/man/cfFVA.Rd