enumerateCycles: function to enumerate cycles

In sybilcycleFreeFlux: Cycle-Free Flux Balance Analysis (CycleFreeFlux)

Description

Uses cycleFreeFlux to enumerate cycles in a given metabolic network.

Usage

enumerateCycles(model, rxnList, solver = SYBIL_SETTINGS("SOLVER"))

Arguments

model	An object of class modelorg.
rxnList	a character vector of reaction ID's to find their flux variability
solver	Single character value. The solver to use. See SYBIL_SETTINGS for possible values. Default: SYBIL_SETTINGS("SOLVER").

Value

return a list of unique loops found in the model.

Author(s)

Abdelmoneim Amer Desouki

See Also

modelorg cfFBA

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
## Not run: 
data(Ec_core)
model=Ec_core

cycles=enumerateCycles(model,react_id(model))

## End(Not run)

## The function is currently defined as
"enumerateCycles"

sybilcycleFreeFlux documentation built on Jan. 16, 2021, 5:35 p.m.