getModel_WW: based on the algorithm given in Wright & Wagner 2008
In sybilcycleFreeFlux: Cycle-Free Flux Balance Analysis (CycleFreeFlux)

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/getModel_WW.R

get a model that contains only reactions in loops.

1	getModel_WW(model, solver = SYBIL_SETTINGS("SOLVER"))

`model`	An object of class `modelorg`.
`solver`	Single character value. The solver to use. See `SYBIL_SETTINGS` for possible values. Default: `SYBIL_SETTINGS("SOLVER")`.

return an object of class modelorg containing subset of reactions of the original model that participate in at least one loop.

Abdelmoneim Amer Desouki

Wright, J. and Wagner, A. (2008). Exhaustive identification of steady state cycles in large stoichiometric networks. BMC systems biology, 2, 61.

modelorg cfFBA

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
## Not run: 
 data(iAF1260)
 loopiAF=getModel_WW(iAF1260)
 
## End(Not run)