synRNASeqNet: Synthetic RNA-Seq Network Generation and Mutual Information Estimates
Version 1.0

It implements various estimators of mutual information, such as the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, the shrinkage estimator, and the Chao-Shen estimator. It also offers wrappers to the kNN and kernel density estimators. Furthermore, it provides various index of performance evaluation such as precision, recall, FPR, F-Score, ROC-PR Curves and so on. Lastly, it provides a brand new way of generating synthetic RNA-Seq Network with known dependence structure.

Package details

AuthorLuciano Garofano, Stefano Maria Pagnotta, Michele Ceccarelli
Date of publication2015-04-20 11:55:18
MaintainerLuciano Garofano <lucianogarofano88@gmail.com>
LicenseGPL (>= 3)
Version1.0
URL https://github.com/lucgar/synRNASeqNet
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("synRNASeqNet")

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synRNASeqNet documentation built on May 29, 2017, 7:05 p.m.