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synRNASeqNet: Synthetic RNA-Seq Network Generation and Mutual Information Estimates
It implements various estimators of mutual information, such as the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, the shrinkage estimator, and the Chao-Shen estimator. It also offers wrappers to the kNN and kernel density estimators. Furthermore, it provides various index of performance evaluation such as precision, recall, FPR, F-Score, ROC-PR Curves and so on. Lastly, it provides a brand new way of generating synthetic RNA-Seq Network with known dependence structure.
Getting started
Browse package contents
Package details |
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| Author | Luciano Garofano, Stefano Maria Pagnotta, Michele Ceccarelli |
| Maintainer | Luciano Garofano <lucianogarofano88@gmail.com> |
| License | GPL (>= 3) |
| Version | 1.0 |
| URL | https://github.com/lucgar/synRNASeqNet |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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