synRNASeqNet: Synthetic RNA-Seq Network Generation and Mutual Information Estimates

It implements various estimators of mutual information, such as the maximum likelihood and the Millow-Madow estimator, various Bayesian estimators, the shrinkage estimator, and the Chao-Shen estimator. It also offers wrappers to the kNN and kernel density estimators. Furthermore, it provides various index of performance evaluation such as precision, recall, FPR, F-Score, ROC-PR Curves and so on. Lastly, it provides a brand new way of generating synthetic RNA-Seq Network with known dependence structure.

Package details

AuthorLuciano Garofano, Stefano Maria Pagnotta, Michele Ceccarelli
MaintainerLuciano Garofano <>
LicenseGPL (>= 3)
Package repositoryView on CRAN
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synRNASeqNet documentation built on May 2, 2019, 6:01 a.m.