Description Usage Arguments Details Author(s) See Also
The function visualises wheter the LD between adjacent values or visualization of pairwise Linkage Disequilibrium (LD) estimates generated by function pairwiseLD
versus marker distance. A single plot is generated for every chromosome.
1 2 3 4 5 |
x |
Object of class |
gpData |
Object of class |
plotType |
You can decide, if you like to have a plot with the LD of the neighbouring markers (option |
dense |
For |
nMarker |
For |
centr |
For |
chr |
For |
type |
For |
breaks |
For |
n |
For |
file |
Optionally a path to a file where the plot is saved to |
fileFormat |
|
onefile |
|
colL |
The color for the line if |
colD |
The color for the dots in the plot of |
... |
further graphical arguments for function |
For more Details see at plotNeighbourLD
or LDDist
Hans-Juergen Auinger
plotNeighbourLD
, LDDist
, plotGenMap
, pairwiseLD
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