summary.LDdf: Summary for LD objects

In synbreed: Framework for the Analysis of Genomic Prediction Data using R

Description

Summary method for class ”LDdf” and ”LDmat”

Usage

## S3 method for class 'LDdf'
summary(object,cores=1,...)
## S3 method for class 'LDmat'
summary(object,cores=1,...)

Arguments

object	object of class LDdf or LDmat which is the output of function pairwiseLD and argument type="data.frame" or type="matrix"
cores	numeric. Specifies the number of cores for parallel computing.
...	not used

Details

Returns for each chromosome: Number of markers; mean, minimum and maximum LD measured as r2; fraction of markers with r2>0.2; average and maximum distance of number of markers

Author(s)

Valentin Wimmer and Hans-Juergen Auinger

See Also

pairwiseLD, ~~~

Examples

  ## Not run: 
  library(synbreed)
  data(maize)
  maizeC <- codeGeno(maize)
  maizeLD <- pairwiseLD(maizeC,chr=1:10,type="data.frame")
  maizeLDm <- pairwiseLD(maizeC,chr=1:10,type="matrix")
  summary(maizeLD)
  summary(maizeLDm)
  
## End(Not run)

synbreed documentation built on May 2, 2019, 3:23 a.m.