Description Usage Arguments Details Author(s) See Also Examples
Summary
method for class ”LDdf” and ”LDmat”
1 2 3 4 |
object |
object of class |
cores |
|
... |
not used |
Returns for each chromosome: Number of markers; mean, minimum and maximum LD measured as r2; fraction of markers with r2>0.2; average and maximum distance of number of markers
Valentin Wimmer and Hans-Juergen Auinger
pairwiseLD
, ~~~
1 2 3 4 5 6 7 8 9 10 | ## Not run:
library(synbreed)
data(maize)
maizeC <- codeGeno(maize)
maizeLD <- pairwiseLD(maizeC,chr=1:10,type="data.frame")
maizeLDm <- pairwiseLD(maizeC,chr=1:10,type="matrix")
summary(maizeLD)
summary(maizeLDm)
## End(Not run)
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