synlik: Synthetic Likelihood methods for intractable likelihoods.

Framework to perform synthetic likelihood inference for models where the likelihood function is unavailable or intractable.

Author
Matteo Fasiolo and Simon Wood
Date of publication
2014-06-08 19:40:05
Maintainer
Matteo Fasiolo <matteo.fasiolo@gmail.com>
License
GPL (>= 2)
Version
0.1.1
URLs

View on CRAN

Man pages

ANYOrNULL-class
Dummy class
bf
Nicholson's 1954 blowfly data
blowSimul
Simulates from the blowfly model
blow_sl
Blowfly model
checkNorm
Checking the multivariate normal approximation.
continue-generic
Continuing estimation.
extractCorr
Extracting correlations from a covariance matrix
functionOrNULL-class
Dummy class
nlar
Estimate non-linear autoregressive coefficients
numericOrNULL-class
Dummy class
orderDist
Summarize marginal distribution of (differenced) series.
plot-smcmc
Method for plotting an object of class 'smcmc'.
plot-synlik
Method for plotting an object of class 'synlik'.
rickerSimul
Simulates from the ricker model
ricker_sl
Ricker model
robCov
Robust covariance matrix estimation
simulate-synlik
Simulate data or statistics from an object of class 'synlik'.
slAcf
Estimate auto-covariances for multiple datasets.
slice
Plot slices of the synthetic log-likelihood.
slik
Evaluates the synthetic log-likelihood.
smcmc
MCMC parameter estimation for objects of class 'synlik'.
smcmc-class
'smcmc-class'
synlik-class
'synlik-class'
synlik-package
Synthetic Likelihood methods for intractable likelihoods

Files in this package

synlik
synlik/TODO
synlik/inst
synlik/inst/CITATION
synlik/inst/doc
synlik/inst/doc/synlik.html
synlik/inst/doc/synlik.Rmd
synlik/inst/doc/synlik.R
synlik/src
synlik/src/Makevars
synlik/src/checkBounds.cpp
synlik/src/nlar.c
synlik/src/synlik.h
synlik/src/acf.c
synlik/src/blowfly.c
synlik/src/cleanStats.cpp
synlik/src/simple_simulators.cpp
synlik/src/summ_stats.h
synlik/src/Makevars.win
synlik/src/mat.c
synlik/NAMESPACE
synlik/NEWS
synlik/data
synlik/data/bf3.rda
synlik/data/ricker_smcmc.RData
synlik/data/blow_smcmc.RData
synlik/data/bf2.rda
synlik/data/ricker_sl.RData
synlik/data/blow_sl.RData
synlik/data/bf1.rda
synlik/R
synlik/R/plot_synlik.R
synlik/R/plot_smcmc.R
synlik/R/I_cleanHessian.R
synlik/R/I_robCov.R
synlik/R/on_load.R
synlik/R/smcmc.R
synlik/R/ricker_sl.R
synlik/R/Trace.R
synlik/R/slice_synlik.R
synlik/R/I_clusterExport.R
synlik/R/extractCorr.R
synlik/R/I_plotMatrix.R
synlik/R/I_logistic.R
synlik/R/simulate_synlik.R
synlik/R/Class_definitions.R
synlik/R/robCov.R
synlik/R/slik.R
synlik/R/blow_sl.R
synlik/R/simulators.R
synlik/R/I_clusterSetUp.R
synlik/R/summary_statistics.R
synlik/R/I_qrInverse.R
synlik/R/I_transMatrix.R
synlik/R/I_forceEval.R
synlik/R/ctrlSetup.R
synlik/R/I_rmvn.R
synlik/R/I_extractHessian.R
synlik/R/I_rollMean.R
synlik/R/checkNorm.R
synlik/R/paramsSimulator.R
synlik/R/continue_smcmc.R
synlik/R/I_funEval.R
synlik/R/I_adaptChol.R
synlik/R/I_combn.R
synlik/R/I_quadModMat.R
synlik/R/I_slick.R
synlik/R/I_plotIter.R
synlik/R/I_clean.R
synlik/R/I_nCm.R
synlik/R/Generic_functions.R
synlik/R/I_empDens.R
synlik/vignettes
synlik/vignettes/synlik.Rmd
synlik/README.md
synlik/MD5
synlik/build
synlik/build/vignette.rds
synlik/DESCRIPTION
synlik/man
synlik/man/rickerSimul.Rd
synlik/man/plot-synlik.Rd
synlik/man/ricker_sl.Rd
synlik/man/blowSimul.Rd
synlik/man/smcmc-class.Rd
synlik/man/continue-generic.Rd
synlik/man/functionOrNULL-class.Rd
synlik/man/checkNorm.Rd
synlik/man/ANYOrNULL-class.Rd
synlik/man/robCov.Rd
synlik/man/plot-smcmc.Rd
synlik/man/smcmc.Rd
synlik/man/blow_sl.Rd
synlik/man/nlar.Rd
synlik/man/orderDist.Rd
synlik/man/slik.Rd
synlik/man/slice.Rd
synlik/man/slAcf.Rd
synlik/man/extractCorr.Rd
synlik/man/synlik-package.Rd
synlik/man/simulate-synlik.Rd
synlik/man/numericOrNULL-class.Rd
synlik/man/synlik-class.Rd
synlik/man/bf.Rd