plot-smcmc | R Documentation |
smcmc
.Method for plotting an object of class smcmc
.
## S4 method for signature 'smcmc,missing' plot(x, trans = NULL, addPlot1 = NULL, addPlot2 = NULL, ...)
x |
An object of class |
trans |
Name list or vector containing names of transforms for some parameters (ex: |
addPlot1 |
Name of additional plotting function that will be call after the MCMC chain have been plotted. It has
to have prototype |
addPlot2 |
Name of additional plotting function that will be call after the histograms have been plotted. It has
to have prototype |
... |
additional arguments to be passed to the plotting functions. |
smcmc-class
, plot
.
data(ricker_smcmc) # Functions for additional annotations (true parameters) addline1 <- function(parNam, ...){ abline(h = exp(ricker_smcmc@param[parNam]), lwd = 2, lty = 2, col = 3) } addline2 <- function(parNam, ...){ abline(v = exp(ricker_smcmc@param[parNam]), lwd = 2, lty = 2, col = 3) } # Transformations (exponentials) trans <- rep("exp", 3) names(trans) <- names(ricker_smcmc@param) plot(ricker_smcmc, trans = trans, addPlot1 = "addline1", addPlot2 = "addline2")
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