as_taxon | R Documentation |
Convert other objects to taxon vectors. Compatible base R vectors can also be converted using the taxon constructor.
as_taxon(x, ...)
x |
An object to be converted to a taxon vector |
... |
Additional parameters. |
# Convert a taxonomy object to a taxon vector x <- taxonomy(taxon(name = c('Carnivora', 'Felidae', 'Panthera', 'Panthera leo', 'Panthera tigris', 'Ursidae', 'Ursus', 'Ursus arctos'), rank = c('order', 'family', 'genus', 'species', 'species', 'family', 'genus', 'species'), id = taxon_id(c('33554', '9681', '9688', '9689', '9694', '9632', '9639', '9644'), db = 'ncbi'), auth = c('Bowdich, 1821', 'Fischer de Waldheim, 1817', 'Oken, 1816', 'L., 1758', 'L., 1758', 'Fischer de Waldheim, 1817', 'L., 1758', 'L., 1758')), supertaxa = c(NA, 1, 2, 3, 3, 1, 6, 7)) names(x) <- letters[1:8] as_taxon(x) # Convert base R vectors as_taxon(c('Carnivora', 'Felidae', 'Panthera', 'Panthera leo')) as_taxon(factor(c('Carnivora', 'Felidae', 'Panthera', 'Panthera leo')))
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