View source: R/cast_canonical.R
cast_canonical | R Documentation |
Construct canonical names using Genus, Species and Subspecies fields. At times due to spaces or NAs in the data fields, it makes it tricky to generate canonical names.
cast_canonical( dat, canonical = "canonical", genus = "", species = "", subspecies = "", verbose = FALSE )
dat |
data frame containing taxonomic list |
canonical |
field name for canonical names. Default 'canonical' |
genus |
field name for Genus field |
species |
field name for Species field |
subspecies |
field name for Subspecies field |
verbose |
verbose output, Default: FALSE |
a data frame containing Canonical names field added or repopulated using filed names for Genus, Species and Subspecies specified in parameters
Other Name functions:
build_gen_syn()
,
cast_scientificname()
,
check_scientific()
,
expand_name()
,
get_accepted_names()
,
guess_taxo_rank()
,
list_higher_taxo()
,
melt_canonical()
,
melt_scientificname()
,
resolve_names()
,
taxo_fuzzy_match()
mylist <- data.frame("genus" = c("Acodon", "Akodon", "Abrothrix", "Abeomelomys"), "species" = c("jelskii","longipilis","longipilis", "sevia"), "subspecies" = c("pyrrhotis","castaneus","", NA)) cast_canonical(mylist,"canonical","genus","species","subspecies")
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