taxo2doc: Taxolist to document

In taxotools: Taxonomic List Processing

Taxolist to document

Description

Converts a taxolist to a formatted document in html, pdf or word document

Usage

taxo2doc(
  taxolist = NULL,
  genus = NA,
  family = NA,
  title = "",
  addsource = TRUE,
  mastersource = "",
  duplicatesyn = TRUE,
  sourcecol = c("black", "blue"),
  outformat = "html_document",
  outdir = tempdir(),
  outfile = "taxolist.html"
)

Arguments

taxolist	taxolist
genus	only process for specific genus. Default("") implying process all
family	only process for specific family. Default("") implying process all
title	List title you want to print in output header
addsource	boolean If the source tag should be displayed. Default TRUE
mastersource	source string for the master list
duplicatesyn	boolean if synonyms should to displayed in their alphabetical sorted position too. Default TRUE
sourcecol	vector of text color values for each source value
outformat	output format one of "html_document", "word_document", "odt_document", "rtf_document", "pdf_document". Default ("html_document")
outdir	output directory for the document. Default temporary directory.
outfile	output file name. Default ("taxolist.html")

Details

Converts a taxolist to a formatted document in html, pdf or word document making it easy for taxonomist to read through the data

Value

NULL Saves a document file

See Also

Other List functions: DwC2taxo(), cast_cs_field(), compact_ids(), get_synonyms(), match_lists(), melt_cs_field(), merge_lists(), syn2taxo(), synonymize_subspecies(), taxo2DwC(), taxo2syn(), wiki2taxo()

Examples

mytaxo <- data.frame("id" = c(1,2,3,4,5,6,7),
                    "canonical" = c("Hypochlorosis ancharia",
                                    "Hypochlorosis tenebrosa",
                                    "Pseudonotis humboldti",
                                    "Myrina ancharia",
                                    "Hypochlorosis ancharia tenebrosa",
                                    "Hypochlorosis ancharia obiana",
                                    "Hypochlorosis lorquinii"),
                     "family" = c("Lycaenidae", "Lycaenidae", "Lycaenidae",
                                  "Lycaenidae", "Lycaenidae", "Lycaenidae",
                                  "Lycaenidae"),
                    "accid" = c(0,1,1,1,0,0,0),
                    "source" = c("itis","itis","wiki","wiki","itis",
                                 "itis","itis"),
                    stringsAsFactors = FALSE)
taxo2doc(mytaxo)
taxo2doc(mytaxo,source="My list")

taxotools documentation built on May 29, 2024, 3:09 a.m.