get_synonyms | R Documentation |
get all the synonyms from the master list for the names in the checklist
get_synonyms(master = NULL, checklist = NULL, commasep = FALSE, verbose = TRUE)
master |
master list of names (taxolist) |
checklist |
list of names to be processed (taxolist) |
commasep |
return list should be comma separated list or each synonym on its own row. Default false |
verbose |
verbose output on the console |
Data frame with names from the checklist and their synonyms present in the master list
Other List functions:
DwC2taxo()
,
cast_cs_field()
,
compact_ids()
,
match_lists()
,
melt_cs_field()
,
merge_lists()
,
syn2taxo()
,
synonymize_subspecies()
,
taxo2DwC()
,
taxo2doc()
,
taxo2syn()
,
wiki2taxo()
master <- data.frame("id" = c(1,2,3), "canonical" = c("Hypochlorosis ancharia", "Hypochlorosis tenebrosa", "Hypochlorosis ancharia tenebrosa"), "family" = c("Lycaenidae", "Lycaenidae", "Lycaenidae"), "accid" = c(0,1,0), "source" = c("itis","itis","itis"), stringsAsFactors = FALSE) checklist <- data.frame("id" = c(1,2,3,4,5), "canonical" = c("Hypochlorosis ancharia", "Pseudonotis humboldti", "Myrina ancharia", "Hypochlorosis ancharia obiana", "Hypochlorosis lorquinii"), "family" = c("Lycaenidae", "Lycaenidae", "Lycaenidae", "Lycaenidae", "Lycaenidae"), "accid" = c(0,1,1,0,0), "source" = c("itis","wiki","wiki","itis", "itis"), stringsAsFactors = FALSE) get_synonyms(master,checklist,commasep=FALSE) get_synonyms(master,checklist,commasep=TRUE)
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