tests/testthat/_snaps/h_km.md

In tern: Create Common TLGs Used in Clinical Trials

control_surv_med_annot works with default settings

Code
  res
Output
  $x
  [1] 0.8

  $y
  [1] 0.85

  $w
  [1] 0.32

  $h
  [1] 0.16

  $fill
  [1] TRUE

control_coxph_annot works with default settings

Code
  res
Output
  $x
  [1] 0.29

  $y
  [1] 0.51

  $w
  [1] 0.4

  $h
  [1] 0.125

  $fill
  [1] TRUE

  $ref_lbls
  [1] FALSE

h_xticks works with default settings

Code
  res
Output
  [1]    0 1000 2000 3000 4000 5000

h_xticks works with xticks number

Code
  res
Output
   [1]    0  100  200  300  400  500  600  700  800  900 1000 1100 1200 1300 1400
  [16] 1500 1600 1700 1800 1900 2000 2100 2200 2300 2400 2500 2600 2700 2800 2900
  [31] 3000 3100 3200 3300 3400 3500 3600 3700 3800 3900 4000 4100 4200 4300 4400
  [46] 4500 4600 4700

h_xticks works with xticks numeric

Code
  res
Output
  [1]    0  365 1000

h_xticks works with max_time only

Code
  res
Output
  [1]    0 1000 2000 3000

h_xticks works with xticks numeric when max_time is not NULL

Code
  res
Output
  [1]    0  365 1000

h_xticks works with xticks number when max_time is not NULL

Code
  res
Output
  [1]    0  500 1000 1500

h_tbl_median_surv estimates median survival time with CI

Code
  res
Output
         N Median        95% CI
  ARM A 69  974.6   (687, 1625)
  ARM B 73  727.8 (555.8, 1156)
  ARM C 58  632.3   (393, 1001)

h_tbl_coxph_pairwise estimates HR, CI and pvalue

Code
  res
Output
          HR       95% CI p-value (log-rank)
  ARM B 1.41 (0.95, 2.09)             0.0905
  ARM C 1.81 (1.16, 2.84)             0.0086

Code
  res
Output
          HR       99% CI p-value (wald)
  ARM B 1.44 (0.85, 2.44)         0.0784
  ARM C 1.89 (1.03, 3.44)         0.0066

h_data_plot works as expected

Code
  res
Output
   [1] "time"      "n.risk"    "n.event"   "n.censor"  "estimate"  "std.error"
   [7] "conf.high" "conf.low"  "strata"    "censor"

h_data_plot respects the ordering of the arm variable factor levels

Code
  res
Output
  [1] "ARM B" "ARM C" "ARM A"

h_data_plot adds rows that have time 0 and estimate 1

Code
  res
Output
  [1] ARM A ARM B ARM C
  Levels: ARM A ARM B ARM C

tern documentation built on Sept. 24, 2024, 9:06 a.m.