tests/testthat/_snaps/h_response_subgroups.md

In tern: Create Common TLGs Used in Clinical Trials

h_proportion_df functions as expected with valid input and default arguments

Code
  res
Output
    arm n n_rsp prop
  1   B 2     1 0.50
  2   A 4     1 0.25

h_proportion_df functions as expected when 0 responses in one group

Code
  res
Output
    arm n n_rsp prop
  1   A 2     1  0.5
  2   B 2     0  0.0

h_proportion_df functions when 0 obs in one arm

Code
  res
Output
    arm n n_rsp      prop
  1   B 0    NA        NA
  2   A 6     2 0.3333333

h_proportion_subgroups_df functions as expected with valid input and default arguments

Code
  res
Output
            arm  n n_rsp      prop     subgroup     var               var_label
  1  B: Placebo  9     7 0.7777778 All Patients     ALL            All Patients
  2   A: Drug X 11     8 0.7272727 All Patients     ALL            All Patients
  3  B: Placebo  5     4 0.8000000            F     SEX                     Sex
  4   A: Drug X  6     6 1.0000000            F     SEX                     Sex
  5  B: Placebo  4     3 0.7500000            M     SEX                     Sex
  6   A: Drug X  5     2 0.4000000            M     SEX                     Sex
  7  B: Placebo  5     4 0.8000000           S1 STRATA2 Stratification Factor 2
  8   A: Drug X  5     4 0.8000000           S1 STRATA2 Stratification Factor 2
  9  B: Placebo  4     3 0.7500000           S2 STRATA2 Stratification Factor 2
  10  A: Drug X  6     4 0.6666667           S2 STRATA2 Stratification Factor 2
     row_type
  1   content
  2   content
  3  analysis
  4  analysis
  5  analysis
  6  analysis
  7  analysis
  8  analysis
  9  analysis
  10 analysis

h_proportion_subgroups_df functions as expected when subgroups is NULL.

Code
  res
Output
           arm  n n_rsp      prop     subgroup var    var_label row_type
  1 B: Placebo  9     7 0.7777778 All Patients ALL All Patients  content
  2  A: Drug X 11     8 0.7272727 All Patients ALL All Patients  content

h_proportion_subgroups_df works as expected with groups_lists

Code
  res
Output
  [1] "low"             "low"             "low/medium"      "low/medium"     
  [5] "low/medium/high" "low/medium/high"

h_odds_ratio_df functions as expected with valid input and default arguments

Code
  res
Output
    arm n_tot or        lcl      ucl conf_level
  1         4  1 0.01984252 50.39681       0.95

h_odds_ratio_df functions as expected with valid input and non-default arguments

Code
  res
Output
    arm n_tot       or       lcl    ucl conf_level      pval
  1       100 2.135417 0.9478486 4.8109        0.9 0.1200954
                    pval_label
  1 p-value (Chi-Squared Test)

h_odds_ratio_df functions as expected with strata

Code
  res
Output
    arm n_tot       or       lcl      ucl conf_level      pval
  1       100 2.072353 0.9091078 4.724022        0.9 0.1411528
                                pval_label
  1 p-value (Cochran-Mantel-Haenszel Test)

h_odds_ratio_df functions when 0 obs in one arm

Code
  res
Output
    arm n_tot or lcl ucl conf_level pval pval_label
  1         6 NA  NA  NA       0.95   NA         NA

h_odds_ratio_subgroups_df functions as expected with valid input and default arguments

Code
  res
Output
    arm n_tot         or       lcl        ucl conf_level     subgroup     var
  1       100  2.1354167 0.8112648   5.620858       0.95 All Patients     ALL
  2        54 12.6315770 1.4840381 107.515254       0.95            F     SEX
  3        46  0.7142857 0.1889048   2.700853       0.95            M     SEX
  4        51  2.1388889 0.5395114   8.479609       0.95           S1 STRATA2
  5        49  2.1111111 0.5405387   8.245089       0.95           S2 STRATA2
                  var_label row_type
  1            All Patients  content
  2                     Sex analysis
  3                     Sex analysis
  4 Stratification Factor 2 analysis
  5 Stratification Factor 2 analysis

h_odds_ratio_subgroups_df functions as expected when subgroups is NULL.

Code
  res
Output
    arm n_tot       or       lcl      ucl conf_level     subgroup var
  1       100 2.135417 0.8112648 5.620858       0.95 All Patients ALL
       var_label row_type
  1 All Patients  content

h_odds_ratio_subgroups_df functions as expected with strata

Code
  res
Output
    arm n_tot         or       lcl       ucl conf_level        pval
  1       100  2.0600522 0.7897670  5.373503       0.95 0.135169890
  2        54 11.2344101 1.3407992 94.131894       0.95 0.007819801
  3        46  0.6700931 0.1796710  2.499150       0.95 0.549837487
  4        51  2.2252093 0.5419286  9.136916       0.95 0.260432159
  5        49  1.9373524 0.4946238  7.588260       0.95 0.337843302
                                pval_label     subgroup     var
  1 p-value (Cochran-Mantel-Haenszel Test) All Patients     ALL
  2 p-value (Cochran-Mantel-Haenszel Test)            F     SEX
  3 p-value (Cochran-Mantel-Haenszel Test)            M     SEX
  4 p-value (Cochran-Mantel-Haenszel Test)           S1 STRATA2
  5 p-value (Cochran-Mantel-Haenszel Test)           S2 STRATA2
                  var_label row_type
  1            All Patients  content
  2                     Sex analysis
  3                     Sex analysis
  4 Stratification Factor 2 analysis
  5 Stratification Factor 2 analysis

h_odds_ratio_subgroups_df works as expected with groups_lists

Code
  res
Output
  [1] "low"             "low/medium"      "low/medium/high"

tern documentation built on Sept. 24, 2024, 9:06 a.m.