tests/testthat/_snaps/h_stack_by_baskets.md

In tern: Create Common TLGs Used in Clinical Trials

h_stack_by_baskets returns the correct dataframe

Code
  res
Output
    STUDYID               USUBJID              ASTDTM       AEDECOD AESEQ
  1 AB12345   AB12345-BRA-11-id-8 2021-12-05 02:02:07 dcd D.2.1.5.3     2
  2 AB12345 AB12345-BRA-12-id-120 2020-02-05 01:42:29 dcd D.2.1.5.3     2
  3 AB12345  AB12345-BRA-1-id-171 2022-11-29 12:18:31 dcd C.1.1.1.3     2
  4 AB12345   AB12345-BRA-1-id-23 2020-07-10 07:32:49 dcd B.2.2.3.1     3
  5 AB12345   AB12345-BRA-1-id-59 2021-10-10 23:54:46 dcd C.1.1.1.3     4
  6 AB12345    AB12345-BRA-1-id-9 2021-06-01 14:39:09 dcd C.1.1.1.3     1
  7 AB12345   AB12345-BRA-11-id-8 2021-12-21 02:02:07 dcd C.1.1.1.3     3
  8 AB12345 AB12345-BRA-12-id-120 2020-10-01 01:42:29 dcd C.1.1.1.3     3
                                SMQ
  1        D.2.1.5.3/A.1.1.1.1 aesi
  2        D.2.1.5.3/A.1.1.1.1 aesi
  3 C.1.1.1.3/B.2.2.3.1 aesi(BROAD)
  4 C.1.1.1.3/B.2.2.3.1 aesi(BROAD)
  5 C.1.1.1.3/B.2.2.3.1 aesi(BROAD)
  6 C.1.1.1.3/B.2.2.3.1 aesi(BROAD)
  7 C.1.1.1.3/B.2.2.3.1 aesi(BROAD)
  8 C.1.1.1.3/B.2.2.3.1 aesi(BROAD)

h_stack_by_baskets returns an empty dataframe with desired variables and labels when there are no adverse events falling within any of the baskets selected

Code
  res
Output
  [1] 0

Code
  res
Output
  [1] "STUDYID" "USUBJID" "ASTDTM"  "AEDECOD" "AESEQ"   "SMQ"

Code
  res
Output
                       STUDYID                      USUBJID 
            "Study Identifier"  "Unique Subject Identifier" 
                        ASTDTM                      AEDECOD 
     "Analysis Start Datetime"    "Dictionary-Derived Term" 
                         AESEQ                          SMQ 
  "Sponsor-Defined Identifier"  "Standardized MedDRA Query"

Code
  res
Output
  [1] "CQ01NAM"  "SMQ01NAM" "SMQ02NAM"

The levels of the SMQ column does also include the options from aag_summary not observed in ADAE

Code
  res
Output
  [1] "C.1.1.1.3/B.2.2.3.1 AESI(BROAD)" "C.1.1.1.3/B.2.2.3.1 aesi(BROAD)"
  [3] "D.2.1.5.3/A.1.1.1.1 AESI"        "D.2.1.5.3/A.1.1.1.1 aesi"       
  [5] "level1_not_in_adae"              "level2_not_in_adae"

tern documentation built on Sept. 24, 2024, 9:06 a.m.