tidy.glm: Custom tidy method for binomial GLM results

In tern: Create Common TLGs Used in Clinical Trials

Custom tidy method for binomial GLM results

Description

Helper method (for broom::tidy()) to prepare a data frame from a glm object with binomial family.

Usage

## S3 method for class 'glm'
tidy(x, conf_level = 0.95, at = NULL, ...)

Arguments

x	(glm) logistic regression model fitted by stats::glm() with "binomial" family.
conf_level	(proportion) confidence level of the interval.
at	(numeric or NULL) optional values for the interaction variable. Otherwise the median is used.
...	additional arguments for the lower level functions.

Value

A data.frame containing the tidied model.

See Also

h_logistic_regression for relevant helper functions.

Examples

library(dplyr)
library(broom)

adrs_f <- tern_ex_adrs %>%
  filter(PARAMCD == "BESRSPI") %>%
  filter(RACE %in% c("ASIAN", "WHITE", "BLACK OR AFRICAN AMERICAN")) %>%
  mutate(
    Response = case_when(AVALC %in% c("PR", "CR") ~ 1, TRUE ~ 0),
    RACE = factor(RACE),
    SEX = factor(SEX)
  )
formatters::var_labels(adrs_f) <- c(formatters::var_labels(tern_ex_adrs), Response = "Response")
mod1 <- fit_logistic(
  data = adrs_f,
  variables = list(
    response = "Response",
    arm = "ARMCD",
    covariates = c("AGE", "RACE")
  )
)
mod2 <- fit_logistic(
  data = adrs_f,
  variables = list(
    response = "Response",
    arm = "ARMCD",
    covariates = c("AGE", "RACE"),
    interaction = "AGE"
  )
)

df <- tidy(mod1, conf_level = 0.99)
df2 <- tidy(mod2, conf_level = 0.99)

tern documentation built on Sept. 24, 2024, 9:06 a.m.