R/Data_BPD_Clin.R

In tidyMicro: A Pipeline for Microbiome Analysis and Visualization

#' A data set containing the clinical data of the subjects sequenced for BPD1 study
#'
#' Infants who required mechanical ventilation had tracheal aspirates samples collected at 7, 14, and 21 days of age (+/- 48 hours). Infants who were mechanically ventilated and had at least one tracheal aspirate collected were included in this study. Subjects were required to be enrolled within 7 days of age. Bacterial profiles were determined by broad-range amplification and sequence analysis of 16S rRNA genes
#'
#' @format A 74x8 data.frame
#' \describe{
#' \item{\code{study_id}}{A character vector of study IDs}
#' \item{\code{weight}}{A numeric vector of infant birth weights (Kg)}
#' \item{\code{sex}}{A factor; infant sex}
#' \item{\code{gestational_age}}{A numeric vector of gestational age in weeks}
#' \item{\code{mom_ethncty}}{A factor; maternal ethnicity}
#' \item{\code{bpd1}}{A factor; BPD severity}
#' \item{\code{day}}{A numeric vector; days of life at time of sequencing}
#' \item{\code{Lib}}{A character vector of sequencing library names}
#' }
#' @source \url{https://doi.org/10.1371/journal.pone.0170120}
"bpd_clin"