R/Data_BPD_Family.R

In tidyMicro: A Pipeline for Microbiome Analysis and Visualization

#' An OTU table of family level taxa counts from BPD1 study
#'
#' Infants who required mechanical ventilation had tracheal aspirates samples collected at 7, 14, and 21 days of age (+/- 48 hours). Infants who were mechanically ventilated and had at least one tracheal aspirate collected were included in this study. Subjects were required to be enrolled within 7 days of age. Bacterial profiles were determined by broad-range amplification and sequence analysis of 16S rRNA genes.
#' @format A 116x75 data.frame
#' \describe{
#' \item{\code{OTU_Name}}{A character vector of family level OTU names}
#' \item{\code{Lib names}}{The following columns are the sequencing counts for each library with library names}
#' }
#' @source \url{https://doi.org/10.1371/journal.pone.0170120}
"bpd_fam"