tidyestimate: A Tidy Implementation of 'ESTIMATE'

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Package details

AuthorKai Aragaki [aut, cre] (<https://orcid.org/0000-0002-9458-0426>), Paul Roebuck [cph] (Copyright holder of ESTIMATE package), Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm), Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm), Hoon Kim [aut] (Author of original ESTIMATE algorithm), Roel Verhaak [aut] (Author of original ESTIMATE algorithm)
MaintainerKai Aragaki <aaragak1@jhmi.edu>
LicenseGPL (>= 2)
Version1.1.0
URL https://github.com/KaiAragaki/tidyestimate
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("tidyestimate")

Try the tidyestimate package in your browser

Any scripts or data that you put into this service are public.

tidyestimate documentation built on Sept. 10, 2021, 1:06 a.m.