plot_purity: Plot Affymetrix purity scores against ESTIMATE study purity...
In tidyestimate: A Tidy Implementation of 'ESTIMATE'

View source: R/plot_purity.R

plot_purity

R Documentation

Plot Affymetrix purity scores against ESTIMATE study purity scores

Description

Plot Affymetrix purity scores against ESTIMATE study purity scores

Usage

plot_purity(scores, is_affymetrix)

Arguments

`scores`	a `data.frame`, usually one output from `estimate_score`
`is_affymetrix`	logical. Are these data from an Affymetrix experiment? Must be `TRUE` - this is essentially a verification from the user

Value

a ggplot

Examples

filter_common_genes(ov, id = "hgnc_symbol", tidy = FALSE, tell_missing = TRUE, find_alias = TRUE) |> 
  estimate_score(is_affymetrix = TRUE) |>
  plot_purity(is_affymetrix = TRUE)

tidyestimate documentation built on Aug. 21, 2023, 9:08 a.m.