Files in tidysdm

Species Distribution Models with Tidymodels

NEWS.md README.md R/make_maxent.R R/prob_metrics.R R/grid_cellsize.R R/blockcv2rsample.R R/check_sdm_presence.R R/sdm_spec_rand_forest.R R/extrapol_mess.R R/grid_offset.R R/out_of_range_warning.R R/plot_pres_vs_bg.R R/thin_by_dist_time.R R/boyce_cont.R R/datasets_docs.R R/control.R R/tss_max.R R/maxent_params.R R/maxnet_fit.R R/utils-pipe.R R/y2d.R R/sample_pseudoabs.R R/sdm_spec_maxent.R R/niche_overlap.R R/recipe_sf.R R/gam_formula.R R/sdm_metric_set.R R/add_member.R R/autoplot_spatial_initial_split.R R/sdm_spec_gam.R R/sample_background_time.R R/clamp_predictors.R R/repeat_ensemble.R R/make_mask_from_presence.R R/sdm_spec_boost_tree.R R/sample_pseudoabs_time.R R/predict_repeat_ensemble.R R/confusion_matrix_df.R R/recipes_sf_methods.R R/misc.R R/pairs.R R/sample_background.R R/filter_vif.R R/filter_high_cor.R R/thin_by_cell_time.R R/calib_class_thresh.R R/predict_simple_ensemble.R R/thin_by_dist.R R/optim_thresh.R R/filter_caret.R R/predict_raster.R R/sdm_spec_glm.R R/spatial_initial_split.R R/geom_split_violin.R R/kap_max.R R/km2m.R R/maxent.R R/zzz.R R/dist_pres_vs_bg.R R/collect_metrics.R R/filter_collinear.R R/thin_by_cell.R R/tss.R R/autoplot_simple_ensemble.R R/simple_ensemble.R R/explain_tidysdm.R R/check_split_balance.R R/check_coords_names.R R/add_repeat.R R/tidysdm-package.R inst/doc/a1_palaeodata_application.R inst/doc/a2_tidymodels_additions.R inst/doc/a1_palaeodata_application.Rmd inst/doc/a0_tidysdm_overview.Rmd inst/doc/a3_troubleshooting.R inst/doc/a2_tidymodels_additions.Rmd inst/doc/a3_troubleshooting.Rmd inst/doc/a0_tidysdm_overview.R tests/testthat.R tests/spelling.R tests/testthat/test_check_sdm_presence.R tests/testthat/test_form_resp.R tests/testthat/test_maxnet_fit.R tests/testthat/test_check_split_balance.R tests/testthat/test_overlap_niche.R tests/testthat/test_sample_background_time.R tests/testthat/test_y2d.R tests/testthat/test_filter_collinear.R tests/testthat/test_thin_by_dist.R tests/testthat/test_blockcv2rsample.R tests/testthat/test_prob_metrics_sf.R tests/testthat/test_sdm_spec_rand_forest.R tests/testthat/test_explain_tidysdm.R tests/testthat/test_thin_by_cell_time.R tests/testthat/test_simple_ensemble.R tests/testthat/test_initial_spatial_split.R tests/testthat/test_km2d.R tests/testthat/test_sample_pseudoabs_time.R tests/testthat/test_make_mask_from_presence.R tests/testthat/test_sdm_spec_gam.R tests/testthat/test_dist_pres_vs_bg.R tests/testthat/test_thin_by_dist_time.R tests/testthat/Rplots.pdf tests/testthat/test_tss.R tests/testthat/test_thin_by_cell.R tests/testthat/test_predict_repeat_ensemble.R tests/testthat/test_extrapol_mess.R tests/testthat/test_calib_class_thresh.R tests/testthat/test_sample_pseudoabs.R tests/testthat/test_sdm_spec_glm.R tests/testthat/test_clamp_predictors.R tests/testthat/test_out_of_range_warning.R tests/testthat/test_repeat_ensemble.R tests/testthat/test_recipe_sf.R tests/testthat/test_predict_simple_ensemble.R tests/testthat/test_sample_background.R vignettes/a1_palaeodata_application.Rmd vignettes/a0_tidysdm_overview.Rmd vignettes/a2_tidymodels_additions.Rmd vignettes/a3_troubleshooting.Rmd man/thin_by_cell.Rd man/sdm_metric_set.Rd man/optim_thresh_kap_max.Rd man/blockcv2rsample.Rd man/prob_to_binary.Rd man/dist_pres_vs_bg.Rd man/grid_cellsize.Rd man/predict.simple_ensemble.Rd man/calib_class_thresh.Rd man/niche_overlap.Rd man/lacerta_ensemble.Rd man/sample_pseudoabs.Rd man/maxnet_fit.Rd man/tidysdm-package.Rd man/optim_thresh_sens.Rd man/sample_pseudoabs_time.Rd man/optim_thresh_tss_max.Rd man/clamp_predictors.Rd man/lacertidae_background.Rd man/pairs-stars.Rd man/sdm_spec_glm.Rd man/km2m.Rd man/tss_max.Rd man/repeat_ensemble.Rd man/sdm_spec_maxent.Rd man/autoplot.simple_ensemble.Rd man/add_member.Rd man/recipe.sf.Rd man/sdm_spec_boost_tree.Rd man/explain_tidysdm.Rd man/check_coords_names.Rd man/form_resp.Rd man/thin_by_cell_time.Rd man/y2d.Rd man/lacerta.Rd man/boyce_cont.Rd man/autoplot.spatial_initial_split.Rd man/optim_thresh.Rd man/simple_ensemble.Rd man/make_mask_from_presence.Rd man/sample_background.Rd man/prob_metrics_sf.Rd man/predict.repeat_ensemble.Rd man/maxnet_predict.Rd man/filter_high_cor.Rd man/filter_collinear.Rd man/control_ensemble.Rd man/collect_metrics.simple_ensemble.Rd man/pipe.Rd man/tss.Rd man/geom_split_violin.Rd man/check_sdm_presence.Rd man/kap_max.Rd man/add_repeat.Rd man/extrapol_mess.Rd man/plot_pres_vs_bg.Rd man/sdm_spec_gam.Rd man/maxent_params.Rd man/thin_by_dist.Rd man/horses.Rd man/thin_by_dist_time.Rd man/conf_matrix_df.Rd man/sample_background_time.Rd man/lacerta_rep_ens.Rd man/spatial_initial_split.Rd man/grid_offset.Rd man/gam_formula.Rd man/check_splits_balance.Rd man/sdm_spec_rand_forest.Rd man/maxent.Rd man/predict_raster.Rd man/out_of_range_warning.Rd