root-method: root
In tidytree: A Tidy Tool for Phylogenetic Tree Data Manipulation
root.treedata R Documentation
root
Description
re-root a tree
Usage
## S3 method for class 'treedata'
root(phy, outgroup, node = NULL, edgelabel = TRUE, ...)
Arguments
phy
tree object
outgroup
a vector of mode numeric or character specifying the new outgroup
node
node to reroot
edgelabel
a logical value specifying whether to treat node labels as
edge labels and thus eventually switching them so that they are associated
with the correct edges.
...
additional parameters passed to ape::root.phylo
Value
rerooted treedata
tidytree documentation built on May 29, 2024, 5:21 a.m.
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| root.treedata | R Documentation |
root
Description
re-root a tree
Usage
## S3 method for class 'treedata'
root(phy, outgroup, node = NULL, edgelabel = TRUE, ...)
Arguments
phy |
tree object |
outgroup |
a vector of mode numeric or character specifying the new outgroup |
node |
node to reroot |
edgelabel |
a logical value specifying whether to treat node labels as edge labels and thus eventually switching them so that they are associated with the correct edges. |
... |
additional parameters passed to ape::root.phylo |
Value
rerooted treedata
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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