timeSeq: Detecting Differentially Expressed Genes in Time Course RNA-Seq Data

Uses a negative binomial mixed-effects (NBME) model to detect nonparallel differential expression(NPDE) genes and parallel differential expression(PDE) genes in the time course RNA-seq data.

AuthorFan Gao, Xiaoxiao Sun
Date of publication2016-10-28 00:05:29
MaintainerFan Gao <fangaohz@gmail.com>
LicenseGPL (>= 2)
Version1.0.2

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Files in this package

timeSeq
timeSeq/inst
timeSeq/inst/doc
timeSeq/inst/doc/my-vignette.html
timeSeq/inst/doc/my-vignette.Rmd
timeSeq/inst/doc/my-vignette.R
timeSeq/NAMESPACE
timeSeq/data
timeSeq/data/simulate.dt.RData
timeSeq/data/pAbp.RData
timeSeq/R
timeSeq/R/timeSeq.R timeSeq/R/timeSeq.sort.R timeSeq/R/timeSeq.permutate.R timeSeq/R/timeSeq.heatmap.R timeSeq/R/timeSeq.screeplot.R
timeSeq/vignettes
timeSeq/vignettes/heatmap.png
timeSeq/vignettes/scree.png
timeSeq/vignettes/my-vignette.Rmd
timeSeq/MD5
timeSeq/build
timeSeq/build/vignette.rds
timeSeq/DESCRIPTION
timeSeq/man
timeSeq/man/timeSeq.screeplot.Rd timeSeq/man/simulate.dt.Rd timeSeq/man/timeSeq_1.0.2-package.Rd timeSeq/man/timeSeq.permutate.Rd timeSeq/man/timeSeq.heatmap.Rd timeSeq/man/timeSeq.sort.Rd timeSeq/man/pAbp.Rd timeSeq/man/timeSeq.Rd

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