Description Usage Arguments Author(s) References Examples
View source: R/timeSeq.screeplot.R
Plot the scree plot for all genes in the dataset.
1 | timeSeq.screeplot(timeSeq.obj,type=c("barplot","lines"))
|
timeSeq.obj |
an object returned by timeSeq function. |
type |
type of plot: "barplot" for the bar plot and "lines" for the line graph. |
Fan Gao and Xiaoxiao Sun
Sun, Xiaoxiao, David Dalpiaz, Di Wu, Jun S. Liu, Wenxuan Zhong, and Ping Ma. "Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model." BMC Bioinformatics, 17(1):324, 2016.
Chong Gu. Model diagnostics for smoothing spline ANOVA models. Canadian Journal of Statistics, 32(4):347-358, 2004.
Chong Gu. Smoothing spline ANOVA models. Springer, second edition, 2013.
Chong Gu and Ping Ma. Optimal smoothing in nonparametric mixed-effect models. Annals of Statistics, pages 1357-1379, 2005a.
Wood (2001) mgcv:GAMs and Generalized Ridge Regression for R. R News 1(2):20-25
1 2 3 4 | data(simulate.dt)
attach(simulate.dt)
model.fit <- timeSeq(data.count,group.label,gene.names,exon.level=FALSE,pvalue=FALSE)
timeSeq.screeplot(model.fit,"lines")
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.