plot.tna_cliques: Plot Cliques of a TNA Network

In tna: Transition Network Analysis (TNA)

Plot Cliques of a TNA Network

Description

Plot Cliques of a TNA Network

Usage

## S3 method for class 'tna_cliques'
plot(
  x,
  n = 6,
  first = 1,
  show_loops = FALSE,
  edge.labels = TRUE,
  edge.label.position = 0.65,
  minimum = 1e-05,
  mar = rep(5, 4),
  layout = "circle",
  layout_args = list(),
  cut = 0.01,
  normalize = TRUE,
  ask = TRUE,
  colors,
  theme = "colorblind",
  ...
)

Arguments

x	A tna_cliques object.
n	An integer defining the maximum number of cliques to show. The defaults is 6.
first	An integer giving the index of the first clique to show. The default index is 1.
show_loops	A logical value indicating whether to include loops in the plots or not.
edge.labels	See qgraph::qgraph().
edge.label.position	See qgraph::qgraph().
minimum	See qgraph::qgraph().
mar	See qgraph::qgraph().
layout	One of the following: A character string describing a qgraph layout. A matrix of node positions to use, with a row for each node and x and y columns for the node positions. A layout function from igraph.
layout_args	A list of arguments to pass to the igraph layout function when layout is a function.
cut	See qgraph::qgraph().
normalize	See qgraph::qgraph().
ask	A logical value. When TRUE, show plots one by one and asks to plot the next plot in interactive mode.
colors	See qgraph::qgraph().
theme	See qgraph::qgraph().
...	Ignored.

Value

NULL (invisibly).

See Also

Clique-related functions cliques(), plot.group_tna_cliques(), print.group_tna_cliques(), print.tna_cliques()

Examples

model <- tna(group_regulation)
cliq <- cliques(model, size = 2)
plot(cliq, n = 1, ask = FALSE)

tna documentation built on June 8, 2025, 10:33 a.m.