API for topolow
Force-Directed Euclidean Embedding of Dissimilarity Data
| Global functions | |
|---|---|
| .onLoad | Source code |
| Euclidify | Man page Source code |
| adaptive_MC_sampling | Man page Source code |
| analyze_network_structure | Man page Source code |
| c25 | Man page |
| calculate_diagnostics | Man page Source code |
| calculate_prediction_interval | Man page Source code |
| calculate_weighted_marginals | Man page Source code |
| check_gaussian_convergence | Man page Source code |
| clean_data | Man page Source code |
| color_palettes | Man page |
| coordinates_to_matrix | Man page Source code |
| create_base_theme | Man page Source code |
| create_cv_folds | Man page Source code |
| create_diagnostic_plots | Man page Source code |
| create_topolow_map | Man page Source code |
| denv_data | Man page |
| detect_outliers_mad | Man page Source code |
| error_calculator_comparison | Man page Source code |
| euclidean_embedding | Man page Source code |
| example_positions | Man page |
| extract_numeric_values | Man page Source code |
| generate_kde_samples | Man page Source code |
| get_grid | Man page Source code |
| ggsave_white_bg | Man page Source code |
| h3n2_data | Man page |
| hiv_titers | Man page |
| hiv_viruses | Man page |
| initial_parameter_optimization | Man page Source code |
| likelihood_function | Man page Source code |
| list_to_matrix | Man page Source code |
| log_transform_parameters | Man page Source code |
| make_interactive | Man page Source code |
| new_aesthetic_config | Man page Source code |
| new_annotation_config | Man page Source code |
| new_dim_reduction_config | Man page Source code |
| new_layout_config | Man page Source code |
| parameter_sensitivity_analysis | Man page Source code |
| plot.parameter_sensitivity | Man page Source code |
| plot.profile_likelihood | Man page Source code |
| plot.topolow_convergence | Man page Source code |
| plot.topolow_diagnostics | Man page Source code |
| plot_3d_mapping | Man page Source code |
| plot_cluster_mapping | Man page Source code |
| plot_network_structure | Man page Source code |
| plot_temporal_mapping | Man page Source code |
| print.parameter_sensitivity | Man page Source code |
| print.profile_likelihood | Man page Source code |
| print.topolow | Man page Source code |
| print.topolow_convergence | Man page Source code |
| print.topolow_diagnostics | Man page Source code |
| process_antigenic_data | Man page Source code |
| profile_likelihood | Man page Source code |
| profile_likelihood_result | Man page Source code |
| reduce_dimensions | Man page Source code |
| run_adaptive_sampling | Man page Source code |
| save_plot | Man page Source code |
| scale_to_original_distances | Man page Source code |
| scatterplot_fitted_vs_true | Man page Source code |
| summary.topolow | Man page Source code |
| symmetric_to_nonsymmetric_matrix | Man page Source code |
| table_to_matrix | Man page Source code |
| titers_list_to_matrix | Man page Source code |
| topolow-package | Man page |
| validate_topolow_df | Man page Source code |
| vectorized_process_distance_matrix | Man page Source code |
| weighted_kde | Man page Source code |
