new_layout_config: Plot Layout Configuration Class
In topolow: Force-Directed Euclidean Embedding of Dissimilarity Data

new_layout_config

R Documentation

Plot Layout Configuration Class

Description

S3 class for configuring plot layout including dimensions, margins, grids and coordinate systems.

Usage

new_layout_config(
  width = 8,
  height = 8,
  dpi = 300,
  aspect_ratio = 1,
  show_grid = TRUE,
  grid_type = "major",
  grid_color = "grey80",
  grid_linetype = "dashed",
  show_axis = TRUE,
  axis_lines = TRUE,
  plot_margin = margin(1, 1, 1, 1, "cm"),
  coord_type = "fixed",
  background_color = "white",
  panel_background_color = "white",
  panel_border = TRUE,
  panel_border_color = "black",
  save_plot = FALSE,
  save_format = "png",
  reverse_x = 1,
  reverse_y = 1,
  x_limits = NULL,
  y_limits = NULL,
  arrow_plot_threshold = 0.1
)

Arguments

`width`	Plot width in inches
`height`	Plot height in inches
`dpi`	Plot resolution
`aspect_ratio`	Plot aspect ratio
`show_grid`	Show plot grid
`grid_type`	Grid type ("none", "major", "minor", "both")
`grid_color`	Grid color
`grid_linetype`	Grid line type
`show_axis`	Show axes
`axis_lines`	Show axis lines
`plot_margin`	Plot margins in cm
`coord_type`	Coordinate type ("fixed", "equal", "flip", "polar")
`background_color`	Plot background color
`panel_background_color`	Panel background color
`panel_border`	Show panel border
`panel_border_color`	Panel border color
`save_plot`	Logical. Whether to save the plot to a file.
`save_format`	Plot save format ("png", "pdf", "svg", "eps")
`reverse_x`	Numeric multiplier for x-axis direction (1 or -1)
`reverse_y`	Numeric multiplier for y-axis direction (1 or -1)
`x_limits`	Numeric vector of length 2 specifying c(min, max) for x-axis. If NULL, limits are set automatically.
`y_limits`	Numeric vector of length 2 specifying c(min, max) for y-axis. If NULL, limits are set automatically.
`arrow_plot_threshold`	Threshold for velocity arrows to be drawn in the same antigenic distance unit (default: 0.10)