calc_esses: Calculates the Effective Sample Sizes from a parsed BEAST2...

Description Usage Arguments Value Author(s) Examples

View source: R/calc_esses.R

Description

Calculates the Effective Sample Sizes from a parsed BEAST2 log file

Usage

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calc_esses(traces, sample_interval)

Arguments

traces

a dataframe with traces with removed burn-in

sample_interval

the interval in timesteps between samples

Value

the effective sample sizes

Author(s)

Richèl J.C. Bilderbeek

Examples

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# Parse an example log file
estimates <- parse_beast_tracelog_file(
  get_tracerer_path("beast2_example_output.log")
)

# Calculate the effective sample sizes of all parameter estimates
calc_esses(estimates, sample_interval = 1000)

tracerer documentation built on May 30, 2021, 5:06 p.m.