calc_esses: Calculates the Effective Sample Sizes from a parsed BEAST2...
In tracerer: Tracer from R
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Calculates the Effective Sample Sizes from a parsed BEAST2 log file
Usage
1
calc_esses(traces, sample_interval)
Arguments
traces
a dataframe with traces with removed burn-in
sample_interval
the interval in timesteps between samples
Value
the effective sample sizes
Author(s)
Richèl J.C. Bilderbeek
Examples
1
2
3
4
5
6
7
# Parse an example log file
estimates <- parse_beast_tracelog_file(
get_tracerer_path("beast2_example_output.log")
)
# Calculate the effective sample sizes of all parameter estimates
calc_esses(estimates, sample_interval = 1000)
tracerer documentation built on May 30, 2021, 5:06 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Calculates the Effective Sample Sizes from a parsed BEAST2 log file
Usage
1 | calc_esses(traces, sample_interval)
|
Arguments
traces |
a dataframe with traces with removed burn-in |
sample_interval |
the interval in timesteps between samples |
Value
the effective sample sizes
Author(s)
Richèl J.C. Bilderbeek
Examples
1 2 3 4 5 6 7 | # Parse an example log file
estimates <- parse_beast_tracelog_file(
get_tracerer_path("beast2_example_output.log")
)
# Calculate the effective sample sizes of all parameter estimates
calc_esses(estimates, sample_interval = 1000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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