Description Usage Arguments Value Author(s) Examples
Calculates the Effective Sample Sizes from a parsed BEAST2 log file
1 | calc_esses(traces, sample_interval)
|
traces |
a dataframe with traces with removed burn-in |
sample_interval |
the interval in timesteps between samples |
the effective sample sizes
Richèl J.C. Bilderbeek
1 2 3 4 5 6 7 | # Parse an example log file
estimates <- parse_beast_tracelog_file(
get_tracerer_path("beast2_example_output.log")
)
# Calculate the effective sample sizes of all parameter estimates
calc_esses(estimates, sample_interval = 1000)
|
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