tractor.base: Read, Manipulate and Visualise Magnetic Resonance Images

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Functions for working with magnetic resonance images. Analyze, NIfTI-1, NIfTI-2 and MGH format images can be read and written; DICOM files can only be read.

Author
Jon Clayden
Date of publication
2016-11-07 21:07:48
Maintainer
Jon Clayden <code@clayden.org>
License
GPL-2
Version
3.0.7
URLs

View on CRAN

Man pages

allEqual
Test whether all elements of a vector are equal
asMriImage
Creating MriImage objects from data
colourScales
Functions for working with colour scales or palettes
deduplicate
Concatenate and deduplicate vectors
DicomMetadata-class
The DicomMetadata class
emptyMatrix
The empty matrix
equivalent
Test two numeric vectors for equivalence
execute
Find or run an external executable file
files
Working with MRI images stored in NIfTI, Analyze and MGH...
implode
Create a character string by concatenating the elements of a...
index
Indexing methods
mergeMriImages
Merging MriImage objects
MriImage-class
The MriImage class
neighbourhoodInfo
Image neighbourhoods
newSparseArrayWithData
Create a SparseArray object
nilObject
The nil object
paths
Functions for file name and path manipulation
pluralise
Number agreement with a vector
printLabelledValues
Pretty print labelled information
promote
Promote a vector to a single-column or single-row matrix
readDicomDirectory
Read a directory of DICOM files
readDicomFile
Read a DICOM file into a DicomMetadata object
SerialisableObject-class
The SerialisableObject class
serialisation
Reference object serialisation and deserialisation
sortDicomDirectories
Sort a directory of DICOM files into series
SparseArray-class
The SparseArray class
threadSafeTempFile
Obtain thread-safe temporary file names
tractor.base-deprecated
Deprecated functions
vector
Miscellaneous vector functions
viewer
A simple interactive viewer for MriImage objects
visualisation
Visualise MriImage objects

Files in this package

tractor.base
tractor.base/inst
tractor.base/inst/CITATION
tractor.base/NAMESPACE
tractor.base/R
tractor.base/R/mgh.R
tractor.base/R/nifti.R
tractor.base/R/10_mri_image.R
tractor.base/R/15_dicom.R
tractor.base/R/files.R
tractor.base/R/sysdata.rda
tractor.base/R/analyze.R
tractor.base/R/dicom_dir.R
tractor.base/R/internal.R
tractor.base/R/deprecated.R
tractor.base/R/05_serialise.R
tractor.base/R/viz.R
tractor.base/R/neighbourhood.R
tractor.base/R/vector.R
tractor.base/R/xform.R
tractor.base/R/00_constants.R
tractor.base/R/misc.R
tractor.base/R/08_sparse.R
tractor.base/R/png.R
tractor.base/R/zzz.R
tractor.base/R/viewer.R
tractor.base/MD5
tractor.base/DESCRIPTION
tractor.base/man
tractor.base/man/serialisation.Rd
tractor.base/man/emptyMatrix.Rd
tractor.base/man/paths.Rd
tractor.base/man/SparseArray-class.Rd
tractor.base/man/execute.Rd
tractor.base/man/MriImage-class.Rd
tractor.base/man/nilObject.Rd
tractor.base/man/deduplicate.Rd
tractor.base/man/readDicomFile.Rd
tractor.base/man/visualisation.Rd
tractor.base/man/DicomMetadata-class.Rd
tractor.base/man/files.Rd
tractor.base/man/pluralise.Rd
tractor.base/man/index.Rd
tractor.base/man/printLabelledValues.Rd
tractor.base/man/newSparseArrayWithData.Rd
tractor.base/man/mergeMriImages.Rd
tractor.base/man/viewer.Rd
tractor.base/man/sortDicomDirectories.Rd
tractor.base/man/colourScales.Rd
tractor.base/man/readDicomDirectory.Rd
tractor.base/man/implode.Rd
tractor.base/man/promote.Rd
tractor.base/man/allEqual.Rd
tractor.base/man/neighbourhoodInfo.Rd
tractor.base/man/threadSafeTempFile.Rd
tractor.base/man/equivalent.Rd
tractor.base/man/vector.Rd
tractor.base/man/tractor.base-deprecated.Rd
tractor.base/man/SerialisableObject-class.Rd
tractor.base/man/asMriImage.Rd