execute: Find or run an external executable file

In tractor.base: Read, Manipulate and Visualise Magnetic Resonance Images

Find or run an external executable file

Description

The execute function is a wrapper around the system2 function in base, which additionally echoes the command being run (including the full path to the executable) if the reportr output level is Debug. locateExecutable simply returns the path to an executable file on the system PATH.

Usage

locateExecutable(fileName, errorIfMissing = TRUE)

execute(executable, params = NULL, errorOnFail = TRUE, silent = FALSE, ...)

Arguments

executable, fileName	Name of the executable to run.
params	A character vector giving the parameters to pass to the executable, if any. Elements will be separated by a space.
errorOnFail, errorIfMissing	Logical value: should an error be produced if the executable can't be found?
silent	Logical value: should the executable be run without any output?
...	Additional arguments to system.

Value

For execute, the return value of the underlying call to system2. For locateExecutable, the location of the requested executable, or NULL if it could not be found.

Note

These functions are designed for Unix systems and may not work on Windows.

Author(s)

Jon Clayden

References

Please cite the following reference when using TractoR in your work:

J.D. Clayden, S. Muñoz Maniega, A.J. Storkey, M.D. King, M.E. Bastin & C.A. Clark (2011). TractoR: Magnetic resonance imaging and tractography with R. Journal of Statistical Software 44(8):1-18. https://www.jstatsoft.org/v44/i08/.

See Also

system2

tractor.base documentation built on Aug. 24, 2022, 5:06 p.m.