traits: Species Trait Data from Around the Web

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Species trait data from many different sources, including sequence data from 'NCBI', plant trait data from 'BETYdb', invasive species data from the Global Invasive Species Database and 'EOL', 'Traitbank' data from 'EOL', Coral traits data from http://coraltraits.org, 'nativity' status ('Flora Europaea' or 'ITIS'), and 'Birdlife' International.

Author
Scott Chamberlain [aut, cre], Zachary Foster [aut], Ignasi Bartomeus [aut], David LeBauer [aut], David Harris [aut]
Date of publication
2016-03-18 15:58:47
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.2.0
URLs

View on CRAN

Man pages

betydb
Search for traits from BETYdb
birdlife_habitat
Get bird habitat information from BirdLife/IUCN
birdlife_threats
Get bird threat information from BirdLife/IUCN
coral
Search for coral data on coraltraits.org
eol_invasive_
Search for presence of taxonomic names in EOL invasive...
fe_native
Check species status (native, exotic, ...) for one species...
g_invasive
Check invasive species status for a set of species from GISD...
is_native
Check if a species is native somewhere
leda
Access LEDA trait data
ncbi_byid
Retrieve gene sequences from NCBI by accession number.
ncbi_byname
Retrieve gene sequences from NCBI by taxon name and gene...
ncbi_searcher
Search for gene sequences available for taxa from NCBI.
plantatt
PLANTATT plant traits dataset
taxa_search
Search for traits by taxa names
traitbank
Search for traits from EOL's Traitbank.
traits-deprecated
Deprecated functions in traits
traits-package
traits - Species trait data from around the web

Files in this package

traits
traits/inst
traits/inst/doc
traits/inst/doc/betydb.html
traits/inst/doc/traits_intro.html
traits/inst/doc/traits_intro.Rmd
traits/inst/doc/betydb.Rmd
traits/inst/PLANTATT_19_Nov_08
traits/inst/PLANTATT_19_Nov_08/plantatt.pdf
traits/inst/PLANTATT_19_Nov_08/PLANTATT_19_Nov_08.xls
traits/inst/PLANTATT_19_Nov_08/plantatt.csv
traits/inst/vign
traits/inst/vign/traits_intro.md
traits/inst/vign/betydb.md
traits/inst/vign/traits_intro.Rmd
traits/inst/vign/betydb.Rmd
traits/tests
traits/tests/testthat.R
traits/tests/testthat
traits/tests/testthat/helper-traits.R
traits/tests/testthat/test-betydb.R
traits/NAMESPACE
traits/data
traits/data/plantatt.rda
traits/R
traits/R/traitbank.R
traits/R/ncbi_byid.R
traits/R/traits-package.r
traits/R/betydb.R
traits/R/birdlife.R
traits/R/is_native.R
traits/R/taxa_search.R
traits/R/leda.R
traits/R/ncbi_byname.R
traits/R/eol_invasive.R
traits/R/deprecated.R
traits/R/g_invasive.R
traits/R/ncbi_searcher.R
traits/R/coral.R
traits/R/fe_native.R
traits/R/zzz.R
traits/vignettes
traits/vignettes/traits_intro.Rmd
traits/vignettes/betydb.Rmd
traits/README.md
traits/MD5
traits/build
traits/build/vignette.rds
traits/DESCRIPTION
traits/man
traits/man/coral.Rd
traits/man/eol_invasive_.Rd
traits/man/traitbank.Rd
traits/man/taxa_search.Rd
traits/man/leda.Rd
traits/man/ncbi_searcher.Rd
traits/man/betydb.Rd
traits/man/plantatt.Rd
traits/man/fe_native.Rd
traits/man/ncbi_byid.Rd
traits/man/g_invasive.Rd
traits/man/traits-package.Rd
traits/man/traits-deprecated.Rd
traits/man/birdlife_habitat.Rd
traits/man/ncbi_byname.Rd
traits/man/is_native.Rd
traits/man/birdlife_threats.Rd
traits/LICENSE