Files in treespace
Statistical Exploration of Landscapes of Phylogenetic Trees
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/plotTreeDiff.R
R/transmissionTrees.R
R/treespace.R
R/metrics.R
R/makeCollapsedTree.R
R/data.R
R/tipsMRCAdepths.R
R/servers.R
R/treeConcordance.R
R/plotGroves.R
R/simulateIndTree.R
R/medTree.R
R/findGroves.R
R/relatedTreeDist.R
src/RcppExports.cpp
src/CPP_update_combinations.cpp
inst/CITATION
inst/doc/tipCategories.Rmd
inst/doc/TransmissionTreesVignette.html
inst/doc/DengueVignette.Rmd
inst/doc/DengueVignette.html
inst/doc/introduction.html
inst/doc/TransmissionTreesVignette.Rmd
inst/doc/tipCategories.html
inst/doc/introduction.Rmd
inst/shiny/ui.R
inst/shiny/server.R
inst/shiny/www/bootstrap.simplex.css
inst/shiny/www/styles.css
inst/shiny/www/img/logo.png
inst/shiny/www/img/line.png
inst/shiny/www/html/help.html
build/vignette.rds
tests/testthat.R
tests/testthat/testbasics.R
vignettes/tipCategories.Rmd
vignettes/DengueVignette.Rmd
vignettes/TransmissionTreesVignette.Rmd
vignettes/introduction.Rmd
data/DengueBEASTMCC.RData
data/woodmiceTrees.RData
data/DengueSeqs.RData
data/DengueTrees.RData
data/fluTrees.RData
man/medTree.Rd
man/findMRCIs.Rd
man/DengueSeqs.Rd
man/simulateIndTree.Rd
man/dot-render.server.info.Rd
man/DengueTrees.Rd
man/refTreeDist.Rd
man/wiwTreeDist.Rd
man/treeVec.Rd
man/treeConcordance.Rd
man/makeCollapsedTree.Rd
man/plotGroves.Rd
man/treeDist.Rd
man/treespace.Rd
man/linearMrca.Rd
man/plotGrovesD3.Rd
man/plotTreeDiff.Rd
man/treespaceServer.Rd
man/findGroves.Rd
man/tipsMRCAdepths.Rd
man/DengueBEASTMCC.Rd
man/fluTrees.Rd
man/relatedTreeDist.Rd
man/tipDiff.Rd
man/wiwMedTree.Rd
man/multiDist.Rd
man/woodmiceTrees.Rd
