Files in treespace
Statistical Exploration of Landscapes of Phylogenetic Trees

LICENSE
NAMESPACE
MD5
DESCRIPTION
README.md man/medTree.Rd man/refTreeDist.Rd man/plotGrovesD3.Rd man/makeCollapsedTree.Rd man/findGroves.Rd man/tipDiff.Rd man/treespace.Rd man/wiwMedTree.Rd man/DengueTrees.Rd man/fluTrees.Rd man/linearMrca.Rd man/treeVec.Rd man/multiDist.Rd man/plotTreeDiff.Rd man/findMRCIs.Rd man/DengueBEASTMCC.Rd man/treeConcordance.Rd man/simulateIndTree.Rd man/tipsMRCAdepths.Rd man/DengueSeqs.Rd man/woodmiceTrees.Rd man/relatedTreeDist.Rd man/plotGroves.Rd man/treeDist.Rd man/treespaceServer.Rd man/wiwTreeDist.Rd
data/DengueBEASTMCC.RData
data/fluTrees.RData
data/DengueSeqs.RData
data/woodmiceTrees.RData
data/DengueTrees.RData
tests/testthat.R tests/testthat/testbasics.R inst/shiny/ui.R inst/shiny/server.R
inst/shiny/www/styles.css
inst/shiny/www/bootstrap.simplex.css
inst/shiny/www/img/line.png
inst/shiny/www/img/logo.png
inst/shiny/www/html/help.html
inst/doc/DengueVignette.R inst/doc/tipCategories.Rmd inst/doc/introduction.Rmd inst/doc/introduction.R
inst/doc/TransmissionTreesVignette.html
inst/doc/tipCategories.R inst/doc/TransmissionTreesVignette.R inst/doc/DengueVignette.Rmd
inst/doc/tipCategories.html
inst/doc/introduction.html
inst/doc/TransmissionTreesVignette.Rmd
inst/doc/DengueVignette.html
build/vignette.rds
src/RcppExports.cpp
src/CPP_update_combinations.cpp
R/metrics.R R/simulateIndTree.R R/tipsMRCAdepths.R R/data.R R/transmissionTrees.R R/treespace.R R/relatedTreeDist.R R/RcppExports.R R/findGroves.R R/medTree.R R/servers.R R/makeCollapsedTree.R R/treeConcordance.R R/plotTreeDiff.R R/plotGroves.R vignettes/tipCategories.Rmd vignettes/TransmissionTreesVignette.Rmd vignettes/DengueVignette.Rmd vignettes/introduction.Rmd
vignettes/figs/concordance_basic-1.png
vignettes/figs/six_heatmap-1.png
vignettes/figs/wiw_MDS1000-1.png
vignettes/figs/trees2_and_3-1.png
vignettes/figs/compare_BEAST_to_other_trees-2.png
vignettes/figs/compare_trees_NJ_v_ML-1.png
vignettes/figs/igraph_options-1.png
vignettes/figs/plotgroves_readme-1.png
vignettes/figs/BEASTtree_diffs-1.png
vignettes/figs/woodmiceMedian_readme-1.png
vignettes/figs/make_NJ-1.png
vignettes/figs/woodmicePlots_readme-2.png
vignettes/figs/plotgroves2_readme-2.png
vignettes/figs/construction.png
vignettes/figs/woodmice_plotTreeDiff-2.png
vignettes/figs/treespaceDensiTree.png
vignettes/figs/compare_BEAST_to_other_trees-3.png
vignettes/figs/distances-2.png
vignettes/figs/plotgroves2_readme-3.png
vignettes/figs/woodmicePlots_readme-3.png
vignettes/figs/woodmice_plotTreeDiff_readme-2.png
vignettes/figs/concordance_permuations-1.png
vignettes/figs/distances_readme-2.png
vignettes/figs/woodmiceCluster1_readme-1.png
vignettes/figs/see_NJ_boots-1.png
vignettes/figs/distances-1.png
vignettes/figs/scree_plot-1.png
vignettes/figs/plot_collapsed_trees-1.png
vignettes/figs/woodmice_plotTreeDiff_readme-1.png
vignettes/figs/treespaceTree.png
vignettes/figs/distances_readme-1.png
vignettes/figs/wiwMedTreePlot-1.png
vignettes/figs/view_ML-1.png
vignettes/figs/woodmice_plotTreeDiff-1.png
vignettes/figs/woodmice-tip-emphasis_readme-1.png
vignettes/figs/six_comparable_trees-1.png
vignettes/figs/compare_trees_NJ_v_ML_recoloured-1.png
vignettes/figs/BEASTtree_diffs-2.png
vignettes/figs/plotgroves-1.png
vignettes/figs/plot_patient_trees-1.png
vignettes/figs/findgroves-with-emphasis_readme-1.png
vignettes/figs/relatedTreeDist_six_trees-1.png
vignettes/figs/plotgroves2_readme-1.png
vignettes/figs/woodmicePlots_readme-1.png
vignettes/figs/concordance_basic-2.png
vignettes/figs/igraph_tree1-1.png
vignettes/figs/see_ML_boots-1.png
vignettes/figs/woodmiceCluster1-1.png
vignettes/figs/trees2_and_3-2.png
vignettes/figs/woodmiceMedian-1.png
vignettes/figs/compare_BEAST_to_other_trees-1.png
vignettes/figs/treespace3d.png
treespace documentation built on Jan. 23, 2018, 5:50 p.m.