Files in treespace
Statistical Exploration of Landscapes of Phylogenetic Trees

MD5
LICENSE
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/shiny/server.R inst/shiny/ui.R
inst/shiny/www/bootstrap.simplex.css
inst/shiny/www/styles.css
inst/shiny/www/img/line.png
inst/shiny/www/img/logo.png
inst/shiny/www/html/help.html
inst/doc/introduction.R inst/doc/introduction.Rmd inst/doc/DengueVignette.R
inst/doc/tipCategories.html
inst/doc/tipCategories.R inst/doc/TransmissionTreesVignette.Rmd inst/doc/tipCategories.Rmd
inst/doc/DengueVignette.html
inst/doc/TransmissionTreesVignette.R
inst/doc/TransmissionTreesVignette.html
inst/doc/introduction.html
inst/doc/DengueVignette.Rmd vignettes/introduction.Rmd
vignettes/treespace3d.png
vignettes/TransmissionTreesVignette.Rmd vignettes/tipCategories.Rmd
vignettes/treespaceDensiTree.png
vignettes/construction.png
vignettes/treespaceTree.png
vignettes/DengueVignette.Rmd
vignettes/vignettes/woodmiceMedian-1.png
vignettes/vignettes/distances-1.png
vignettes/vignettes/woodmiceCluster1-1.png
vignettes/vignettes/woodmice_plotTreeDiff-1.png
vignettes/vignettes/plotgroves-1.png
vignettes/vignettes/woodmice_plotTreeDiff-2.png
vignettes/vignettes/distances-2.png
R/servers.R R/medTree.R R/data.R R/treeConcordance.R R/makeCollapsedTree.R R/relatedTreeDist.R R/simulateIndTree.R R/RcppExports.R R/plotTreeDiff.R R/plotGroves.R R/treespace.R R/transmissionTrees.R R/tipsMRCAdepths.R R/findGroves.R R/metrics.R
src/RcppExports.cpp
src/CPP_update_combinations.cpp
man/wiwMedTree.Rd man/findMRCIs.Rd man/fluTrees.Rd man/simulateIndTree.Rd man/makeCollapsedTree.Rd man/plotGrovesD3.Rd man/findGroves.Rd man/linearMrca.Rd man/tipsMRCAdepths.Rd man/DengueBEASTMCC.Rd man/tipDiff.Rd man/refTreeDist.Rd man/medTree.Rd man/plotGroves.Rd man/plotTreeDiff.Rd man/treespaceServer.Rd man/treeDist.Rd man/treespace.Rd man/DengueSeqs.Rd man/treeVec.Rd man/DengueTrees.Rd man/relatedTreeDist.Rd man/wiwTreeDist.Rd man/treeConcordance.Rd man/multiDist.Rd man/woodmiceTrees.Rd
build/vignette.rds
tests/testthat.R tests/testthat/testbasics.R
data/woodmiceTrees.RData
data/DengueSeqs.RData
data/fluTrees.RData
data/DengueTrees.RData
data/DengueBEASTMCC.RData
treespace documentation built on May 14, 2018, 5:04 p.m.