Man pages for treespace
Statistical Exploration of Landscapes of Phylogenetic Trees
| DengueBEASTMCC | Dengue fever BEAST MCC tree |
| DengueSeqs | Dengue fever sequences |
| DengueTrees | BEAST analysis of Dengue fever |
| dot-render.server.info | Auxiliary functions |
| findGroves | Identify clusters of similar trees |
| findMRCIs | Find MRCIs |
| fluTrees | BEAST analysis of seasonal influenza (A/H3N2) |
| linearMrca | Linear MRCA function |
| makeCollapsedTree | Collapse a tree into a single tip per category |
| medTree | Geometric median tree function |
| multiDist | Metric function for 'multiPhylo' input |
| plotGroves | Scatterplot of groups of trees |
| plotGrovesD3 | Scatterplot of groups of trees using 'scatterD3' |
| plotTreeDiff | Plot tree differences |
| refTreeDist | Metric function for comparing a reference 'phylo' to... |
| relatedTreeDist | Tree distance when trees have "related" tips |
| simulateIndTree | Simulate randomised "individuals" tree |
| tipDiff | Find tip position differences |
| tipsMRCAdepths | Tip-tip MRCA depths |
| treeConcordance | Tree concordance |
| treeDist | Metric function |
| treespace | Phylogenetic tree exploration |
| treespaceServer | Web-based tree explorer |
| treeVec | Tree vector function |
| wiwMedTree | Median transmission tree |
| wiwTreeDist | Transmission tree distance |
| woodmiceTrees | Bootstrap trees from woodmouse dataset |
