| mx_make | R Documentation |
This is a utility function for the OpenMx package maintainer. For convenience,
it lives in umx, not the OpenMx package. mx_make mirrors
umx_make(). It uses OpenMx's Makefile to compile and install (C++,
OpenMP, NPSOL vs CRAN build). Use devtools for win-builder and package
hygiene.
After install, restart R then library(OpenMx). It does not use devtools::load_all()
due to OpenMx (DLL / S4 load issues).
Two independent targets matter:
Installed library - what library(OpenMx) runs. Updated by
mx_make() / "install" / "cran-install" / "GenomicMx" (or CRAN).
Source tree at pkg - what "win" packages for win-builder.
Independent of whatever is currently installed in R.
mx_make(
what = c("install", "NPSOL", "cran-install", "build", "Rd", "check", "win", "spell",
"sitrep", "deps_install", "testthat", "git", "GenomicMx", "build_GenomicMx",
"--help"),
pkg = "~/bin/OpenMx",
deploymentTarget = "14.0",
openmp = TRUE,
email = NULL
)
what |
Target. One of:
|
pkg |
Path to the OpenMx source tree (default |
deploymentTarget |
macOS |
openmp |
Logical; pass |
email |
Optional. For |
Invisibly NULL, or the result of a returning target (e.g. sitrep).
Update Rd files after editing roxygen in R:
mx_make("Rd") runs OpenMx make roxygen (util/rox: compile DLL + roxygenize rd).
Do not use bare devtools::document() on OpenMx; man pages are git-tracked and the Makefile owns the official path.
Install this tree into R's library:
mx_make() or mx_make("install") (NPSOL when the Makefile enables it). Or mx_make("cran-install") without NPSOL.
Restart R, then verify identity:
library(OpenMx); packageVersion("OpenMx"); find.package("OpenMx").
The path must be the library you just installed into (not a forgotten
CRAN copy on another .libPaths() entry). Optional: xmu_openmx_engine_status() for GenomicMx capability.
Win-builder (same source tree, not the installed DLL):
Prefer a clean commit if you care what is archived; then
mx_make("win") – devtools::check_win_devel(pkg).
Local install is not required for win-builder; only the files under pkg are uploaded.
Prebuilt release binary (not local WIP (work in progress)):
mx_make("GenomicMx") -> install.OpenMx() from GitHub Releases.
https://github.com/tbates/umx/releases, OpenMx Makefile
umx_make(), install.OpenMx(), xmu_openmx_engine_status()
Other xmu internal not for end user:
umxModel(),
umxRenameMatrix(),
umx_APA_pval(),
umx_fun_mean_sd(),
umx_get_bracket_addresses(),
umx_make(),
umx_standardize(),
umx_string_to_algebra(),
xmuHasSquareBrackets(),
xmuLabel_MATRIX_Model(),
xmuLabel_Matrix(),
xmuLabel_RAM_Model(),
xmuMI(),
xmuMakeOneHeadedPathsFromPathList(),
xmuMakeTwoHeadedPathsFromPathList(),
xmuMaxLevels(),
xmuMinLevels(),
xmuPropagateLabels(),
xmuRAM2Ordinal(),
xmuTwinSuper_Continuous(),
xmuTwinSuper_NoBinary(),
xmuTwinUpgradeMeansToCovariateModel(),
xmu_CI_merge(),
xmu_CI_stash(),
xmu_DF_to_mxData_TypeCov(),
xmu_PadAndPruneForDefVars(),
xmu_WLS_align_jacobian(),
xmu_WLS_align_weight(),
xmu_WLS_polycor_names(),
xmu_ace_de_apply_censor_thresholds(),
xmu_ace_de_parse_censor_meta(),
xmu_ace_de_parse_censor_rule(),
xmu_ace_de_release_binary_v1(),
xmu_bracket_address2rclabel(),
xmu_catml_df3_diagnostic(),
xmu_catml_discrepancy_at_WLS(),
xmu_catml_eval_model(),
xmu_catml_implied_correlation(),
xmu_catml_wls_v(),
xmu_cell_is_on(),
xmu_check_levels_identical(),
xmu_check_needs_means(),
xmu_check_variance(),
xmu_clean_label(),
xmu_compare_constraint_note(),
xmu_compare_robust_ML(),
xmu_data_missing(),
xmu_data_swap_a_block(),
xmu_describe_data_WLS(),
xmu_dot_make_paths(),
xmu_dot_make_residuals(),
xmu_dot_maker(),
xmu_dot_move_ranks(),
xmu_dot_rank_str(),
xmu_extract_column(),
xmu_get_CI(),
xmu_has_summary_mxData(),
xmu_invert_matrix(),
xmu_is_ordinal_WLS(),
xmu_lavaan_process_group(),
xmu_make_TwinSuperModel(),
xmu_make_bin_cont_pair_data(),
xmu_make_mxData(),
xmu_match.arg(),
xmu_mxData_summary(),
xmu_mxRefModels(),
xmu_name_from_lavaan_str(),
xmu_path2twin(),
xmu_path_regex(),
xmu_print_algebras(),
xmu_ram_de_apply_censor_thresholds(),
xmu_ram_de_parse_censor_meta(),
xmu_rclabel_2_bracket_address(),
xmu_relevel_factors(),
xmu_require_summary_mxData(),
xmu_robust_ML_fit(),
xmu_safe_run_summary(),
xmu_savalei_fit_cfi(),
xmu_savalei_fit_rmsea(),
xmu_savalei_fit_tli(),
xmu_savalei_null_scaling_factor(),
xmu_savalei_polycor_blocks(),
xmu_savalei_scaling_factor(),
xmu_set_sep_from_suffix(),
xmu_show_fit_or_comparison(),
xmu_simplex_corner(),
xmu_standardize_ACE(),
xmu_standardize_ACEcov(),
xmu_standardize_ACEv(),
xmu_standardize_CP(),
xmu_standardize_IP(),
xmu_standardize_LISREL(),
xmu_standardize_RAM(),
xmu_standardize_SexLim(),
xmu_standardize_Simplex(),
xmu_start_value_list(),
xmu_starts(),
xmu_summary_RAM_group_parameters(),
xmu_threshold_id_RAM(),
xmu_threshold_id_twin_check(),
xmu_topo_sort(),
xmu_twin_add_WeightMatrices(),
xmu_twin_check(),
xmu_twin_get_var_names(),
xmu_twin_make_def_means_mats_and_alg(),
xmu_twin_upgrade_selDvs2SelVars(),
xmu_update_covar(),
xmu_wls_display_chi(),
xmu_wls_extract_WV()
## Not run:
# Flight checklist (local engine + win-builder)
mx_make("Rd") # util/rox: refresh man/*.Rd
mx_make() # make install this tree into R library
# restart R, then:
# library(OpenMx); packageVersion("OpenMx"); find.package("OpenMx")
mx_make("win") # upload source tree to win-builder (devel)
mx_make("win", pkg = "~/bin/OpenMx-upstream-wincheck",
email = "timothy.c.bates@gmail.com") # results to you, not DESCRIPTION Maintainer
mx_make("cran-install")
mx_make("spell")
mx_make("sitrep")
mx_make("deps_install")
mx_make("GenomicMx") # prebuilt binary via install.OpenMx("GenomicMx")
mx_make("NPSOL") # alias of install
mx_make("--help")
## End(Not run)
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