ungeneanno: Collate Gene Annotation Data from Uniprot and NIH Gene Databases

Taking a list of genes, the package collates together the summary information about those genes from the publicly available resources at Uniprot and NCBI. Additionally, the package is able to collate publication information from a search of the NCBI Pubmed database.

AuthorI. Richard Thompson [aut, cre]
Date of publication2016-09-21 12:35:11
MaintainerI. Richard Thompson <ithompson@qf.org.qa>
LicenseGPL-3
Version0.1.6

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Files in this package

ungeneanno
ungeneanno/inst
ungeneanno/inst/doc
ungeneanno/inst/doc/Complete_examples.Rmd
ungeneanno/inst/doc/PubMed_Query_Example.Rmd
ungeneanno/inst/doc/Complete_examples.html
ungeneanno/inst/doc/Complete_examples.R
ungeneanno/inst/doc/PubMed_Query_Example.html
ungeneanno/tests
ungeneanno/tests/testthat.R
ungeneanno/tests/testthat
ungeneanno/tests/testthat/test-NIHPubMedConnections.R
ungeneanno/tests/testthat/test-NIHConnections.R
ungeneanno/tests/testthat/uniprot_test_gene.rds
ungeneanno/tests/testthat/ncbi_test_pubmed2.rds
ungeneanno/tests/testthat/test-getUniqueGeneList.R
ungeneanno/tests/testthat/test-UniportConnections.R
ungeneanno/tests/testthat/test-getGroupGeneList.R
ungeneanno/tests/testthat/ncbi_test_gene.rds
ungeneanno/tests/testthat/ncbi_test_pubmed.rds
ungeneanno/NAMESPACE
ungeneanno/NEWS
ungeneanno/data
ungeneanno/data/genematrix.rda
ungeneanno/data/inputlist.rda
ungeneanno/R
ungeneanno/R/GeneAnno.R ungeneanno/R/data.R ungeneanno/R/Pubmed.R ungeneanno/R/NCBI.R ungeneanno/R/ungeneanno.R ungeneanno/R/GeneAnnoClasses.R ungeneanno/R/Uniprot.R
ungeneanno/vignettes
ungeneanno/vignettes/Complete_examples.Rmd
ungeneanno/vignettes/PubMed_Query_Example.Rmd
ungeneanno/MD5
ungeneanno/build
ungeneanno/build/vignette.rds
ungeneanno/DESCRIPTION
ungeneanno/man
ungeneanno/man/getNihQuery.Rd ungeneanno/man/gene-class.Rd ungeneanno/man/inputlist.Rd ungeneanno/man/getUniprotSummary.Rd ungeneanno/man/genematrix.Rd ungeneanno/man/produceOutputFiles.Rd ungeneanno/man/pubmed-class.Rd ungeneanno/man/getUniqueGeneList.Rd ungeneanno/man/getGroupGeneList.Rd ungeneanno/man/getPublicationList.Rd ungeneanno/man/ungeneanno-package.Rd ungeneanno/man/geneanno-class.Rd ungeneanno/man/getNihSummary.Rd ungeneanno/man/getGeneSummary.Rd ungeneanno/man/searchPublications.Rd ungeneanno/man/parseInputFile.Rd ungeneanno/man/query-class.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.