ungeneanno: Collate Gene Annotation Data from Uniprot and NIH Gene Databases

Taking a list of genes, the package collates together the summary information about those genes from the publicly available resources at Uniprot and NCBI. Additionally, the package is able to collate publication information from a search of the NCBI Pubmed database.

Install the latest version of this package by entering the following in R:
install.packages("ungeneanno")
AuthorI. Richard Thompson [aut, cre]
Date of publication2016-09-21 12:35:11
MaintainerI. Richard Thompson <ithompson@qf.org.qa>
LicenseGPL-3
Version0.1.6

View on CRAN

Functions

gene Man page
geneanno Man page
geneanno-class Man page
gene-class Man page
genematrix Man page
getGeneSummary Man page
getGeneSummary,geneanno-method Man page
getGroupGeneList Man page
getGroupGeneList,geneanno,character-method Man page
getGroupGeneList,geneanno,matrix-method Man page
getNihQuery Man page
getNihQuery,query-method Man page
getNihSummary Man page
getNihSummary,gene-method Man page
getPublicationList Man page
getPublicationList,character-method Man page
getUniprotSummary Man page
getUniprotSummary,gene-method Man page
getUniqueGeneList Man page
getUniqueGeneList,geneanno,character-method Man page
getUniqueGeneList,geneanno,matrix-method Man page
inputlist Man page
parseInputFile Man page
parseInputFile,geneanno-method Man page
produceOutputFiles Man page
produceOutputFiles,geneanno,vector,vector,missing-method Man page
produceOutputFiles,geneanno,vector,vector,vector-method Man page
pubmed Man page
pubmed-class Man page
query Man page
query-class Man page
searchPublications Man page
searchPublications,matrix-method Man page
ungeneanno Man page
ungeneanno-package Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.