Save Gene Information to group Specific Output Files

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Description

produceOutputFiles saves the downloaded gene summary information into group specific files.

Usage

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produceOutputFiles(x, dgl, gs, pub)

## S4 method for signature 'geneanno,vector,vector,missing'
produceOutputFiles(x, dgl, gs)

## S4 method for signature 'geneanno,vector,vector,vector'
produceOutputFiles(x, dgl, gs, pub)

Arguments

x

object of class geneanno.

dgl

a Vector of group specific vectors relating the list of genes to the groups, as in the input file

gs

Vector of Gene Summary information downloaded from NIH and Uniprot databases, typically output by getGeneSummary

pub

Matrix containing journal article information from the PubMed resource, as retruned by the searchPublications function

Methods (by class)

  • x = geneanno,dgl = vector,gs = vector,pub = missing: Save object data to text files.

  • x = geneanno,dgl = vector,gs = vector,pub = vector: Save object data, including journal articles, to text files.