| backTransform-methods | Methods for Function backTransform in Package 'unmarked' |
| birds | BBS Point Count and Occurrence Data from 2 Bird Species |
| bup | Extract Best Unbiased Predictors (BUPs) of latent variables... |
| coef-methods | Methods for Function coef in Package 'unmarked' |
| colext | Fit the dynamic occupancy model of MacKenzie et. al (2003) |
| computeMPLElambdas | Compute the penalty weight for the MPLE penalized likelihood... |
| confint-methods | Methods for Function confint in Package 'unmarked' |
| crossbill | Detection/non-detection data on the European crossbill... |
| crossVal | Cross-validation methods for fitted 'unmarked' models and fit... |
| cruz | Landscape data for Santa Cruz Island |
| csvToUMF | Convert .CSV File to an unmarkedFrame |
| detFuns | Distance-sampling detection functions and associated density... |
| distsamp | Fit the hierarchical distance sampling model of Royle et al.... |
| distsampOpen | Open population model for distance sampling data |
| extract-methods | Methods for bracket extraction [ in Package 'unmarked' |
| fitList | Create a list of fitted 'unmarked' models |
| fitted | Calculate fitted (expected) values from a model |
| formatDistData | Bin distance data |
| formatMult | Create unmarkedMultFrame from Long Format Data Frame |
| formatWideLong | Convert between wide and long data formats. |
| frogs | 2001 Delaware North American Amphibian Monitoring Program... |
| gdistremoval | Fit the combined distance and removal model of Amundson et... |
| gdistsamp | Fit the generalized distance sampling model of Chandler et... |
| getB-methods | Methods for Function getB in Package 'unmarked' |
| getFP-methods | Methods for Function getFP in Package 'unmarked' |
| getP | Get detection probability matrix from a fitted model |
| gf | Green frog count index data |
| gmultmix | Generalized multinomial N-mixture model |
| goccu | Fit the multi-scale occupancy model of Nichols et al. (2008) |
| gpcount | Generalized binomial N-mixture model for repeated count data |
| IDS | Fit the integrated distance sampling model of Kery et al.... |
| issj | Distance-sampling data for the Island Scrub Jay (_Aphelocoma... |
| jay | European Jay data from the Swiss Breeding Bird Survey 2002 |
| lambda2psi | Convert Poisson mean (lambda) to probability of occurrence... |
| linearComb-methods | Methods for Function linearComb in Package 'unmarked' |
| linetran | Simulated line transect data |
| makePiFuns | Create functions to compute multinomial cell probabilities |
| mallard | Mallard count data |
| masspcru | Massachusetts North American Amphibian Monitoring Program... |
| MesoCarnivores | Occupancy data for coyote, red fox, and bobcat |
| modSel | Model selection on a list of 'unmarked' model fits |
| multinomPois | Multinomial-Poisson Mixtures Model |
| multmixOpen | Open population multinomial N-mixture model |
| nmixTTD | Fit the N-mixture Time-to-detection Model of Strebel et al.... |
| nonparboot | Get non-parametric bootstrap samples from an 'unmarked' model |
| occu | Fit the MacKenzie et al. (2002) Occupancy Model |
| occuComm | Fit a community occupancy model with species-level random... |
| occuCOP | Fit the occupancy model using count data |
| occuFP | Fit occupancy models when false positive detections occur... |
| occuMS | Fit Multi-State Occupancy Models (Nichols et al. 2007,... |
| occuMulti | Fit the multi-species occupancy model of Rota et al. (2016) |
| occuPEN | Fit the MacKenzie et al. (2002) Occupancy Model with the... |
| occuPEN_CV | Fit the MacKenzie et al. (2002) Occupancy Model with the... |
| occuRN | Fit the occupancy model of Royle and Nichols (2003) |
| occuTTD | Fit Single-Season and Dynamic Time-to-detection Occupancy... |
| optimizePenalty-methods | Identify Optimal Penalty Parameter Value |
| ovendata | Removal data for the Ovenbird |
| parboot | Parametric bootstrap for 'unmarked' models |
| pcount | Fit the N-mixture model of Royle (2004) |
| pcountOpen | Fit the open N-mixture models of Dail and Madsen (2011) and... |
| pcount.spHDS | Fit spatial hierarchical distance sampling model. |
| piFuns | Compute multinomial cell probabilities |
| plotEffects | Plot marginal effects of covariates in unmarked models |
| pointtran | Simulated point-transect data |
| posteriorSamples | Draw samples from the posterior predictive distribution |
| powerAnalysis | Conduct a power analysis for an 'unmarked' model |
| predict | Predict from fitted models and other unmarked objects |
| randomTerms | Extract estimates of random effect terms |
| ranef | Estimate posterior distributions of latent occupancy or... |
| residuals | Calculate residuals from a model |
| richness | Estimate posterior distributions of site richness |
| SE-methods | Methods for Function SE in Package 'unmarked' |
| shinyPower | Launch a Shiny app to help with power analysis |
| sigma | Extract estimates of random effect standard deviations |
| simulate | Simulate datasets from any 'unmarked' model type |
| SSE | Compute Sum of Squared Residuals for a Model Fit. |
| Switzerland | Swiss landscape data |
| unmarkedEstimate-class | Class "unmarkedEstimate" |
| unmarkedEstimateList-class | Class "unmarkedEstimateList" |
| unmarkedFit-class | Class "unmarkedFit" |
| unmarkedFitList-class | Class "unmarkedFitList" |
| unmarkedFrame | Create an unmarkedFrame, or one of its child classes. |
| unmarkedFrame-class | Class "unmarkedFrame" |
| unmarkedFrameDS | Organize data for the distance sampling model of Royle et al.... |
| unmarkedFrameDSO | Create an object of class unmarkedFrameDSO that contains data... |
| unmarkedFrameGDR | Organize data for the combined distance and removal... |
| unmarkedFrameMMO | Create an object of class unmarkedFrameMMO that contains data... |
| unmarkedFrameMPois | Organize data for the multinomial-Poisson mixture model of... |
| unmarkedFrameOccu | Organize data for the single season occupancy models fit by... |
| unmarkedFrameOccuComm | Organize data for the community occupancy model fit by... |
| unmarkedFrameOccuCOP | Organize data for the occupancy model using count data fit by... |
| unmarkedFrameOccuFP | Organize data for the single season occupancy models fit by... |
| unmarkedFrameOccuMS | Organize data for the multi-state occupancy model fit by... |
| unmarkedFrameOccuMulti | Organize data for the multispecies occupancy model fit by... |
| unmarkedFrameOccuTTD | Create an unmarkedFrameOccuTTD object for the... |
| unmarkedFramePCO | Create an object of class unmarkedFramePCO that contains data... |
| unmarkedFramePCount | Organize data for the N-mixture model fit by pcount |
| unmarkedModSel-class | unmarkedModSel class and methods |
| unmarkedMultFrame | Create an unmarkedMultFrame, unmarkedFrameGMM,... |
| unmarked-package | Models for Data from Unmarked Animals |
| unmarkedPower-class | Methods for unmarkedPower objects |
| unmarkedPowerList | Summarize a series of unmarked power analyses |
| unmarkedRanef-class | Class '"unmarkedRanef"' |
| vcov-methods | Methods for Function vcov in Package 'unmarked' |
| vif | Compute Variance Inflation Factors for an unmarkedFit Object. |
