config_df: Default parameters of config.

In vanquish: Variant Quality Investigation Helper

Description

A dataframe containing default parameters.

Usage

config_df

Format

A data frame with 12 variables:

threshold

Threshold for allele frequency

skew

Skewness for allele frequency

lower

Lower bound for allele frequency region

upper

Upper bound for allele frequency region

ldpthred

Threshold to determine low depth

hom_mle

Hom MLE of p in Beta-Binomial model

het_mle

Het MLE of p in Beta-Binomial model

Hom_thred

Threshold between hom and high

High_thred

Threshold between high and het

Het_thred

Threshold between het and low

hom_rho

Hom MLE of rho in Beta-Binomial model

het_rho

Het MLE of rho in Beta-Binomial model

Source

Created by Tao Jiang

vanquish documentation built on May 2, 2019, 9:42 a.m.