getAvgLL: Calculate average log-likelihood

In vanquish: Variant Quality Investigation Helper

Description

Calculate average log-likelihood

Usage

getAvgLL(df, hom_mle, het_mle, hom_rho, het_rho)

Arguments

df	Input modified file
hom_mle	Hom MLE of p in Beta-Binomial model, default is 0.9981416 from NA12878_1_L5
het_mle	Het MLE of p in Beta-Binomial model, default is 0.4737897 from NA12878_1_L5
hom_rho	Hom MLE of rho in Beta-Binomial model, default is 0.04570275 from NA12878_1_L5
het_rho	Het MLE of rho in Beta-Binomial model, default is 0.02224098 from NA12878_1_L5

Value

meanLL

vanquish documentation built on May 2, 2019, 9:42 a.m.