varbvs: Large-Scale Bayesian Variable Selection Using Variational Methods

Fast algorithms for fitting Bayesian variable selection models and computing Bayes factors, in which the outcome (or response variable) is modeled using a linear regression or a logistic regression. The algorithms are based on the variational approximations described in "Scalable variational inference for Bayesian variable selection in regression, and its accuracy in genetic association studies" (P. Carbonetto & M. Stephens, 2012, <DOI:10.1214/12-BA703>). This software has been applied to large data sets with over a million variables and thousands of samples.

AuthorPeter Carbonetto, Matthew Stephens, David Gerard
Date of publication2017-03-24 05:37:09 UTC
MaintainerPeter Carbonetto <peter.carbonetto@gmail.com>
LicenseGPL (>= 3)
Version2.0-8
http://github.com/pcarbo/varbvs

View on CRAN

Functions

bayesfactor Man page
cred Man page
cytokine Man page
diagsq Man page
diagsqt Man page
leukemia Man page
logit Man page
logpexp Man page
logsigmoid Man page
normalizelogweights Man page
plot.varbvs Man page
predict.varbvs Man page
print.summary.varbvs Man page
rand Man page
randn Man page
sigmoid Man page
subset.varbvs Man page
summary.varbvs Man page
update_eta Man page
update_etaz Man page
updatestats_varbvsbin Man page
updatestats_varbvsbinz Man page
var1 Man page
var1.cols Man page
varbvs Man page
varbvsbin Man page
varbvsbinupdate Man page
varbvsbinz Man page
varbvsbinzupdate Man page
varbvscoefcred Man page
varbvsindep Man page
varbvsnorm Man page
varbvsnormupdate Man page
varbvs-package Man page
varbvspve Man page

Files

varbvs
varbvs/inst
varbvs/inst/CITATION
varbvs/inst/doc
varbvs/inst/doc/cfw.Rmd
varbvs/inst/doc/leukemia.R
varbvs/inst/doc/cfw.html
varbvs/inst/doc/cfw.R
varbvs/inst/doc/cytokine.R
varbvs/inst/doc/cytokine.html
varbvs/inst/doc/cytokine.Rmd
varbvs/inst/doc/leukemia.Rmd
varbvs/inst/doc/cd.Rmd
varbvs/inst/doc/cd.html
varbvs/inst/doc/leukemia.html
varbvs/inst/doc/cd.R
varbvs/tests
varbvs/tests/testthat.R
varbvs/tests/testthat
varbvs/tests/testthat/demo.cc.R
varbvs/tests/testthat/test_varbvs.R
varbvs/tests/testthat/demo.qtl.R
varbvs/tests/testthat/test_varbvsnormupdate.R
varbvs/src
varbvs/src/diagsq.h
varbvs/src/misc.c
varbvs/src/varbvs.h
varbvs/src/varbvsr.h
varbvs/src/misc.h
varbvs/src/varbvsr.c
varbvs/src/diagsqr.c
varbvs/src/types.h
varbvs/src/varbvs.c
varbvs/src/init.c
varbvs/src/RcppExports.cpp
varbvs/src/varbvsnormupdate_rcpp.cpp
varbvs/src/diagsq.c
varbvs/NAMESPACE
varbvs/data
varbvs/data/cytokine.RData
varbvs/data/datalist
varbvs/data/leukemia.RData
varbvs/R
varbvs/R/varbvsbinz.R varbvs/R/varbvsnormupdate.R varbvs/R/bayesfactor.R varbvs/R/subset.varbvs.R varbvs/R/varbvscoefcred.R varbvs/R/varbvsbinzupdate.R varbvs/R/predict.varbvs.R varbvs/R/varbvspve.R varbvs/R/varbvsindep.R varbvs/R/varbvsbin.R varbvs/R/varbvs.R varbvs/R/RcppExports.R varbvs/R/summary.varbvs.R varbvs/R/varbvsbinupdate.R varbvs/R/varbvsnorm.R varbvs/R/plot.varbvs.R varbvs/R/misc.R
varbvs/vignettes
varbvs/vignettes/cfw.Rmd
varbvs/vignettes/cytokine.Rmd
varbvs/vignettes/leukemia.Rmd
varbvs/vignettes/cd.Rmd
varbvs/README.md
varbvs/MD5
varbvs/build
varbvs/build/vignette.rds
varbvs/DESCRIPTION
varbvs/man
varbvs/man/varbvs-package.Rd varbvs/man/varbvscoefcred.Rd varbvs/man/varbvs-internal.Rd varbvs/man/leukemia.Rd varbvs/man/rand.Rd varbvs/man/varbvsindep.Rd varbvs/man/plot.varbvs.Rd varbvs/man/bayesfactor.Rd varbvs/man/normalizelogweights.Rd varbvs/man/varbvs.Rd varbvs/man/cred.Rd varbvs/man/predict.varbvs.Rd varbvs/man/subset.varbvs.Rd varbvs/man/cytokine.Rd varbvs/man/summary.varbvs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.