vcexample: Example data for Penalized Variance Component method

In vcpen: Penalized Variance Components Analysis

Description

Datasets for an example run of vcpen with 4 variance components calculated as kernel matrices from genotype dosage (dose) on 100 subjects with two covariates (covmat), and a continuous response.

Format

The example contains three data.frames and a response vector for 100 subjects at 70 SNPs accross 4 variance components:

covmat

two arbitrary covariates (columns) for 100 subjects (rows)

dose

genotype dosage at 70 SNPs (columns) and 100 subjects (rows)

doseinfo

2-column matrix with indices for grouping SNPs into variance components (for Kernel Matrix)

response

continuous response vector for 100 subjects

Examples

data(vcexample)
dim(dose)
dim(doseinfo)
dim(covmat)
length(response)

vcpen documentation built on Jan. 3, 2022, 5:12 p.m.