position_allele_freq: position_allele_freq
In vivaldi: Viral Variant Location and Diversity
View source: R/position_allele_freqs.R
position_allele_freq R Documentation
position_allele_freq
Description
Reads in a dataframe that has been arranged (arrange_data) and filtered (filter_variants) and outputs plots
Usage
position_allele_freq(vardf, segment, nt)
Arguments
vardf
A rearranged (arrange_data) and filtered (filtered_variants) vcf dataframe
segment
Name of segment (must be in quotes)
nt
Position on segment (must be in quotes)
Value
A plot showing the the frequencies of the major and minor allele at the given position across all samples
Examples
position_allele_freq(example_filtered_SNV_df,"H1N1_NP", "1247")
vivaldi documentation built on March 31, 2023, 9:20 p.m.
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View source: R/position_allele_freqs.R
| position_allele_freq | R Documentation |
position_allele_freq
Description
Reads in a dataframe that has been arranged (arrange_data) and filtered (filter_variants) and outputs plots
Usage
position_allele_freq(vardf, segment, nt)
Arguments
vardf |
A rearranged (arrange_data) and filtered (filtered_variants) vcf dataframe |
segment |
Name of segment (must be in quotes) |
nt |
Position on segment (must be in quotes) |
Value
A plot showing the the frequencies of the major and minor allele at the given position across all samples
Examples
position_allele_freq(example_filtered_SNV_df,"H1N1_NP", "1247")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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