snv_genome | R Documentation |
Reads in a dataframe that has been arranged (arrange_data) and filtered (filter_variants) and outputs plots
snv_genome(vardf)
vardf |
A rearranged (arrange_data) and filtered (filtered_variants) vcf dataframe |
A bar plot showing the number of variants per sample colored by their SNPEff annotation
# Example 1: Simple dataframe
df <- data.frame(sample = c("m1", "m1", "m1", "m1", "m1",
"m2", "m2", "m2", "m2", "m2"),
annotation = c("downstrean_gene_variant", "synonymous_variant",
"synonymous_variant", "stop_gained",
"missense_variant", "downstrean_gene_variant",
"downstrean_gene_variant", "synonymous_variant",
"stop_gained", "missense_variant")
)
df
snv_genome(df)
# Example 2: Sample dataframe
snv_genome(example_filtered_SNV_df)
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