View source: R/shared_snv_plot.R
shared_snv_plot | R Documentation |
Reads in a dataframe that has been arranged (arrange_data) and filtered (filter_variants) and outputs plots
shared_snv_plot(vardf, samples = unique(DF_filt$sample))
vardf |
A rearranged (arrange_data) and filtered (filtered_variants) vcf dataframe |
samples |
A vector of samples to be compared (default:all samples in DF_filt) |
A plot showing the location of variants and the number of samples that contain each variant
samples = c("a_1_fb", "a_1_iv", "a_2_fb", "a_2_iv", "a_3_fb", "a_3_iv", "b_1_fb", "b_1_iv")
shared_snv_plot(example_filtered_SNV_df, samples)
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