vmsbase: GUI Tools to Process, Analyze and Plot Fisheries Data
Version 2.1.3

The tools you need to process, analyze, combine, integrate and plot your fishery data: the georeferenced dataset from the Vessel Monitoring System (VMS), from the Automatic Information System (AIS) or other tracking devices, as well as the catches or landings dataset from the Logbook or Vessel Register. Package 'vmsbase' is equipped by Viewer Tools to visually inspect data at different steps of the analyses and to produce effective outputs for reports and scientific publications. Viewers are conceived to show the VMS pings, to visualize single or multiple tracks for fishing vessels, or to represent the VMS data on Google Viewer, so that the user can produce easy to interpret and more realistic visualization of both fishing effort and effort behaviour. Package 'vmsbase' represents the implementation of several R routines which have been developed by the "Tor Vergata" University of Rome Team involved in the Italian National Program for the Data Collection Framework for Fisheries Data between 2009-2012.

Browse man pages Browse package API and functions Browse package files

AuthorLorenzo D'Andrea, Tommaso Russo, Antonio Parisi, Stefano Cataudella
Date of publication2016-06-29 02:51:53
MaintainerLorenzo D'Andrea <support@vmsbase.org>
LicenseGPL (>= 2)
Version2.1.3
URL http://www.vmsbase.org/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("vmsbase")

Man pages

Assign_Area: Assign Area - Internal Function
bathymetry: Bathymetry rData File class
CountMap: Effort Count - Internal Function
gui_dcf_ind: DCF indicators GUI
gui_join_lb_vms: VMS-LB Match GUI
gui_lb_db_create: LogBook DataBase Creation GUI
gui_lb_db_edit: Logbook Editing GUI
gui_lb_db_stat: LogBook DB Status GUI
gui_lb_editraw: Raw LogBook Editing GUI
gui_lb_met_cla: LogBook Metier Classification GUI
gui_lb_met_dis: LogBook Metier Discovery GUI
gui_lb_met_edi: Metier Editing GUI
gui_main: VMSbase main GUI
gui_mark_fis_poi: Mark Fishing Points GUI
gui_out_grid: VMS Effort Gridding GUI
gui_vms_db_are: VMS DB Area Assignment GUI
gui_vms_db_clean: VMS DB Clean GUI The 'gui_vms_db_clean' function implements...
gui_vms_db_create: VMS DataBase Creation GUI
gui_vms_db_cut: VMS DB Cut GUI The 'gui_vms_db_cut' function implements the...
gui_vms_db_dep: VMS DB Depth Assignment GUI The 'gui_vms_db_dep' function...
gui_vms_db_intr: VMS DB Interpolation GUI The 'gui_vms_db_intr' function...
gui_vmsdb_mixsou: VMS DataBase Creation GUI
gui_vms_db_sel: VMS DataBase Select GUI The 'gui_vms_db_sel' function...
gui_vms_db_stat: VMS DataBase Status GUI The 'gui_vms_db_stat' function...
gui_vms_editraw: Raw VMS Editing GUI
gui_vms_met_pred: Predict Metier GUI The 'gui_vms_met_pred' function implements...
gui_vms_save_bat: VMS DB Save Bathymetry GUI The 'gui_vms_save_bat' function...
gui_vms_view_intrp: VMS DB View Interpolated Data GUI The 'gui_vms_view_intrp'...
gui_vms_view_ping: VMS DB View Raw Ping Data GUI The 'gui_vms_view_ping'...
gui_vms_view_track: VMS DB View Track Data GUI The 'gui_vms_view_track' function...
gui_vms_viz_adv: VMS DB View Track Data GUI The 'gui_vms_view_track' function...
harbCoo: Harbours Coordinates Shape File class
Join2shp: Shape File Data Joining - Internal Function
kno2kmh: Knots to Km/h speed conversion function
latsex2dec: Sexagesimal to Decimal Latitude conversion function
log_Cla: LogBook Clustering class
log_DB: LogBook DataBase class
log_File: LogBook File Class
lonsex2dec: Sexagesimal to Decimal Longitude conversion function
plotNet: Neural Network Plotting - Internal Function
polymap: Land Map Shape File class
que_vms_DB: VMS DataBase Query class
rad2deg: Radians to Degree Angles conversion function
saveRawLogBook: Raw LogBook editing function
saveRawVms: Raw VMS editing function
vmsbase: GUI Tools to Process, Analyze and Plot Fisheries Data
vms_DB: VMS DataBase class
vms_File: VMS File Class

Functions

Assign_Area Man page Source code
CountMap Man page Source code
H0 Source code
H1 Source code
H2 Source code
H3 Source code
Join2shp Man page Source code
StandardizeByCol Source code
add.alpha Source code
bathymetry Man page
bathymetry-class Man page
bathyview Source code
dH0 Source code
dH1 Source code
dH2 Source code
dH3 Source code
get_wdgt_vals Source code
gui_dcf_ind Man page Source code
gui_join_lb_vms Man page Source code
gui_lb_db_create Man page Source code
gui_lb_db_edit Man page Source code
gui_lb_db_stat Man page Source code
gui_lb_editraw Man page Source code
gui_lb_met_cla Man page Source code
gui_lb_met_dis Man page Source code
gui_lb_met_edi Man page Source code
gui_main Man page Source code
gui_mark_fis_poi Man page Source code
gui_out_grid Man page Source code
gui_vms_db_are Man page Source code
gui_vms_db_clean Man page Source code
gui_vms_db_create Man page Source code
gui_vms_db_cut Man page Source code
gui_vms_db_dep Man page Source code
gui_vms_db_intr Man page Source code
gui_vms_db_sel Man page Source code
gui_vms_db_stat Man page Source code
gui_vms_editraw Man page Source code
gui_vms_met_pred Man page Source code
gui_vms_save_bat Man page Source code
gui_vms_view_intrp Man page Source code
gui_vms_view_ping Man page Source code
gui_vms_view_track Man page Source code
gui_vms_viz_adv Man page Source code
gui_vmsdb_mixsou Man page Source code
harbCoo Man page
harbCoo-class Man page
intrpview2 Source code
kno2kmh Man page Source code
latsex2dec Man page Source code
log_Cla Man page
log_Cla-class Man page
log_DB Man page
log_DB-class Man page
log_File Man page
log_File-class Man page
long2UTM Source code
lonsex2dec Man page Source code
lower.to.upper.tri.inds Source code
meanabsdev Source code
merge_source Source code
o_Tps Source code
onAttach Source code
pingview Source code
plotNet Man page Source code
plot_IDs Source code
plot_box Source code
plot_comp Source code
plot_coun Source code
plot_dens Source code
plot_statot Source code
polymap Man page
polymap-class Man page
que_vms_DB Man page
que_vms_DB-class Man page
rad2deg Man page Source code
recu_dep Source code
recu_dep_RDS Source code
saveRawEflalo Source code
saveRawLogBook Man page Source code
saveRawVms Man page Source code
set_wdgt_sel Source code
set_wdgt_vals Source code
sizeDiss Source code
trackview Source code
trackview2 Source code
turn_wdgt_off Source code
turn_wdgt_on Source code
upper.to.lower.tri.inds Source code
vms_DB Man page
vms_DB-class Man page
vms_File Man page
vms_File-class Man page
vmsbase Man page
vmsbase-package Man page

Files

inst
inst/img
inst/img/vms_300_spada.png
inst/img/torvergata.png
inst/img/vms_300_spada_ais.png
inst/img/vms_300.png
inst/ico
inst/ico/view-calendar-timeline.png
inst/ico/view-refresh-5.ico
inst/ico/edit-clear-2.png
inst/ico/draw-bezier-curves.png
inst/ico/folder-html.png
inst/ico/media-eject-5.png
inst/ico/map-compass.png
inst/ico/network-server-database.png
inst/ico/download-3.png
inst/ico/dialog-close.png
inst/ico/document-open-remote.png
inst/ico/edit-4.png
inst/ico/insert-link-64.png
inst/ico/adva-vie.png
inst/ico/toggle_log.png
inst/ico/system-wifi.png
inst/ico/dialog-ok-2.png
inst/ico/document-close-3.png
inst/ico/office-chart-scatter.png
inst/ico/db_update.png
inst/ico/document-quick_restart.png
inst/ico/netjaxer.png
inst/ico/folder-man.png
inst/ico/edit-cut-3.png
inst/ico/office-chart-pie.png
inst/ico/document-save-2.ico
inst/ico/folder-yellow.png
inst/ico/folder-orange.png
inst/ico/application-exit-5.png
inst/ico/folder-blue.png
inst/ico/tools-wizard.png
inst/ico/dialog-apply.png
inst/ico/folder-cyan.png
inst/ico/db_status.png
inst/ico/office-chart-area.png
inst/ico/pipe.png
inst/ico/user-available.png
inst/ico/lifejacket.png
inst/ico/edit-add-2.ico
inst/ico/go-down-3.png
inst/ico/db_comit.png
inst/ico/accessories-dictionary.png
inst/ico/preferences-desktop-2.png
inst/ico/google_maps.png
inst/ico/retroshare1.png
inst/ico/db_mix_sou.ico
inst/ico/address-book-new.ico
inst/ico/mark.png
inst/ico/tools-wizard-3.png
inst/ico/user-invisible.png
inst/ico/folder-green.png
inst/ico/folder-download.png
inst/ico/list-remove-4.ico
inst/ico/referencer.png
inst/ico/games-endturn-2.png
inst/ico/internet-web-browser-3.png
inst/ico/address-book-new-4.png
inst/ico/insert-link-2.ico
inst/ico/user-busy.png
inst/ico/blockdevice-2.png
inst/ico/office-chart-ring.png
inst/ico/configure-2.png
inst/ico/document-properties.png
inst/ico/db_add.ico
inst/ico/folder-grey.png
inst/ico/db_remove.png
inst/ico/system-search-5.png
inst/ico/db_add.png
inst/ico/zim-2.png
inst/ico/media-eject-3.png
inst/ico/folder-saved-search.png
inst/ico/folder-red.png
inst/GPL
inst/GPL/LICENSE
inst/extdata
inst/extdata/Sta_met
inst/extdata/EU_CODES_MET.csv
inst/extdata/FAO_CODES_SPECIES.csv
inst/extdata/tacsat_format.rawvms
inst/extdata/EU_MET_DATA.csv
NAMESPACE
R
R/gui_lb_db_edit.R
R/gui_lb_db_create.R
R/gui_vms_save_bat.R
R/gui_vms_met_pred.R
R/gui_lb_met_dis.R
R/gui_vms_view_track.R
R/gui_dcf_ind.R
R/fun_vms_db_clean.R
R/rad2deg.R
R/gui_mark_fis_poi.R
R/reference_classes.R
R/gui_vms_db_stat.R
R/gui_vms_view_ping.R
R/lonsex2dec.R
R/gui_lb_met_edi.R
R/gui_out_grid.R
R/fun_view.R
R/knots2kmh.R
R/gui_lb_met_cla.R
R/gui_vms_db_select.R
R/saveRawLogBook.R
R/gui_vms_db_cut.R
R/internal.R
R/gui_vms_view_intrp.R
R/gui_vms_editraw.R
R/latsex2dec.R
R/gui_mixsou.R
R/gui_vms_viz_adv.R
R/gui_main.R
R/gui_vms_db_clean.R
R/vmsbase.R
R/gui_vms_db_dep.R
R/gui_vms_db_intr.R
R/gui_lb_db_stat.R
R/editFun.R
R/gui_join_lb_vms.R
R/zzz.R
R/saveRawVms.R
R/gui_vms_db_are.R
R/gui_lb_editraw.R
R/gui_vms_db_create.R
README.md
MD5
DESCRIPTION
man
man/log_DB.Rd
man/CountMap.Rd
man/gui_vms_db_clean.Rd
man/gui_lb_editraw.Rd
man/gui_lb_db_create.Rd
man/gui_join_lb_vms.Rd
man/gui_vms_db_are.Rd
man/polymap.Rd
man/Join2shp.Rd
man/vmsbase.Rd
man/gui_lb_met_cla.Rd
man/que_vms_DB.Rd
man/Assign_Area.Rd
man/gui_dcf_ind.Rd
man/vms_DB.Rd
man/gui_out_grid.Rd
man/latsex2dec.Rd
man/vms_File.Rd
man/log_Cla.Rd
man/gui_vms_view_intrp.Rd
man/harbCoo.Rd
man/gui_vms_save_bat.Rd
man/log_File.Rd
man/gui_main.Rd
man/gui_lb_db_edit.Rd
man/lonsex2dec.Rd
man/gui_vms_editraw.Rd
man/gui_vms_db_cut.Rd
man/gui_vms_viz_adv.Rd
man/gui_mark_fis_poi.Rd
man/gui_vms_view_track.Rd
man/gui_vms_db_stat.Rd
man/gui_vms_met_pred.Rd
man/gui_vms_db_create.Rd
man/saveRawVms.Rd
man/gui_vms_db_dep.Rd
man/kno2kmh.Rd
man/rad2deg.Rd
man/gui_lb_met_dis.Rd
man/gui_vms_view_ping.Rd
man/gui_vms_db_sel.Rd
man/plotNet.Rd
man/gui_lb_db_stat.Rd
man/gui_vmsdb_mixsou.Rd
man/gui_lb_met_edi.Rd
man/saveRawLogBook.Rd
man/bathymetry.Rd
man/gui_vms_db_intr.Rd
vmsbase documentation built on May 19, 2017, 11:45 p.m.