vmsbase: GUI Tools to Process, Analyze and Plot Fisheries Data

The tools you need to process, analyze, combine, integrate and plot your fishery data: the georeferenced dataset from the Vessel Monitoring System (VMS), from the Automatic Information System (AIS) or other tracking devices, as well as the catches or landings dataset from the Logbook or Vessel Register. Package 'vmsbase' is equipped by Viewer Tools to visually inspect data at different steps of the analyses and to produce effective outputs for reports and scientific publications. Viewers are conceived to show the VMS pings, to visualize single or multiple tracks for fishing vessels, or to represent the VMS data on Google Viewer, so that the user can produce easy to interpret and more realistic visualization of both fishing effort and effort behaviour. Package 'vmsbase' represents the implementation of several R routines which have been developed by the "Tor Vergata" University of Rome Team involved in the Italian National Program for the Data Collection Framework for Fisheries Data between 2009-2012.

Author
Lorenzo D'Andrea, Tommaso Russo, Antonio Parisi, Stefano Cataudella
Date of publication
2016-06-29 02:51:53
Maintainer
Lorenzo D'Andrea <support@vmsbase.org>
License
GPL (>= 2)
Version
2.1.3
URLs

View on CRAN

Man pages

Assign_Area
Assign Area - Internal Function
bathymetry
Bathymetry rData File class
CountMap
Effort Count - Internal Function
gui_dcf_ind
DCF indicators GUI
gui_join_lb_vms
VMS-LB Match GUI
gui_lb_db_create
LogBook DataBase Creation GUI
gui_lb_db_edit
Logbook Editing GUI
gui_lb_db_stat
LogBook DB Status GUI
gui_lb_editraw
Raw LogBook Editing GUI
gui_lb_met_cla
LogBook Metier Classification GUI
gui_lb_met_dis
LogBook Metier Discovery GUI
gui_lb_met_edi
Metier Editing GUI
gui_main
VMSbase main GUI
gui_mark_fis_poi
Mark Fishing Points GUI
gui_out_grid
VMS Effort Gridding GUI
gui_vms_db_are
VMS DB Area Assignment GUI
gui_vms_db_clean
VMS DB Clean GUI The 'gui_vms_db_clean' function implements...
gui_vms_db_create
VMS DataBase Creation GUI
gui_vms_db_cut
VMS DB Cut GUI The 'gui_vms_db_cut' function implements the...
gui_vms_db_dep
VMS DB Depth Assignment GUI The 'gui_vms_db_dep' function...
gui_vms_db_intr
VMS DB Interpolation GUI The 'gui_vms_db_intr' function...
gui_vmsdb_mixsou
VMS DataBase Creation GUI
gui_vms_db_sel
VMS DataBase Select GUI The 'gui_vms_db_sel' function...
gui_vms_db_stat
VMS DataBase Status GUI The 'gui_vms_db_stat' function...
gui_vms_editraw
Raw VMS Editing GUI
gui_vms_met_pred
Predict Metier GUI The 'gui_vms_met_pred' function implements...
gui_vms_save_bat
VMS DB Save Bathymetry GUI The 'gui_vms_save_bat' function...
gui_vms_view_intrp
VMS DB View Interpolated Data GUI The 'gui_vms_view_intrp'...
gui_vms_view_ping
VMS DB View Raw Ping Data GUI The 'gui_vms_view_ping'...
gui_vms_view_track
VMS DB View Track Data GUI The 'gui_vms_view_track' function...
gui_vms_viz_adv
VMS DB View Track Data GUI The 'gui_vms_view_track' function...
harbCoo
Harbours Coordinates Shape File class
Join2shp
Shape File Data Joining - Internal Function
kno2kmh
Knots to Km/h speed conversion function
latsex2dec
Sexagesimal to Decimal Latitude conversion function
log_Cla
LogBook Clustering class
log_DB
LogBook DataBase class
log_File
LogBook File Class
lonsex2dec
Sexagesimal to Decimal Longitude conversion function
plotNet
Neural Network Plotting - Internal Function
polymap
Land Map Shape File class
que_vms_DB
VMS DataBase Query class
rad2deg
Radians to Degree Angles conversion function
saveRawLogBook
Raw LogBook editing function
saveRawVms
Raw VMS editing function
vmsbase
GUI Tools to Process, Analyze and Plot Fisheries Data
vms_DB
VMS DataBase class
vms_File
VMS File Class

Files in this package

vmsbase
vmsbase/inst
vmsbase/inst/img
vmsbase/inst/img/vms_300_spada.png
vmsbase/inst/img/torvergata.png
vmsbase/inst/img/vms_300_spada_ais.png
vmsbase/inst/img/vms_300.png
vmsbase/inst/ico
vmsbase/inst/ico/view-calendar-timeline.png
vmsbase/inst/ico/view-refresh-5.ico
vmsbase/inst/ico/edit-clear-2.png
vmsbase/inst/ico/draw-bezier-curves.png
vmsbase/inst/ico/folder-html.png
vmsbase/inst/ico/media-eject-5.png
vmsbase/inst/ico/map-compass.png
vmsbase/inst/ico/network-server-database.png
vmsbase/inst/ico/download-3.png
vmsbase/inst/ico/dialog-close.png
vmsbase/inst/ico/document-open-remote.png
vmsbase/inst/ico/edit-4.png
vmsbase/inst/ico/insert-link-64.png
vmsbase/inst/ico/adva-vie.png
vmsbase/inst/ico/toggle_log.png
vmsbase/inst/ico/system-wifi.png
vmsbase/inst/ico/dialog-ok-2.png
vmsbase/inst/ico/document-close-3.png
vmsbase/inst/ico/office-chart-scatter.png
vmsbase/inst/ico/db_update.png
vmsbase/inst/ico/document-quick_restart.png
vmsbase/inst/ico/netjaxer.png
vmsbase/inst/ico/folder-man.png
vmsbase/inst/ico/edit-cut-3.png
vmsbase/inst/ico/office-chart-pie.png
vmsbase/inst/ico/document-save-2.ico
vmsbase/inst/ico/folder-yellow.png
vmsbase/inst/ico/folder-orange.png
vmsbase/inst/ico/application-exit-5.png
vmsbase/inst/ico/folder-blue.png
vmsbase/inst/ico/tools-wizard.png
vmsbase/inst/ico/dialog-apply.png
vmsbase/inst/ico/folder-cyan.png
vmsbase/inst/ico/db_status.png
vmsbase/inst/ico/office-chart-area.png
vmsbase/inst/ico/pipe.png
vmsbase/inst/ico/user-available.png
vmsbase/inst/ico/lifejacket.png
vmsbase/inst/ico/edit-add-2.ico
vmsbase/inst/ico/go-down-3.png
vmsbase/inst/ico/db_comit.png
vmsbase/inst/ico/accessories-dictionary.png
vmsbase/inst/ico/preferences-desktop-2.png
vmsbase/inst/ico/google_maps.png
vmsbase/inst/ico/retroshare1.png
vmsbase/inst/ico/db_mix_sou.ico
vmsbase/inst/ico/address-book-new.ico
vmsbase/inst/ico/mark.png
vmsbase/inst/ico/tools-wizard-3.png
vmsbase/inst/ico/user-invisible.png
vmsbase/inst/ico/folder-green.png
vmsbase/inst/ico/folder-download.png
vmsbase/inst/ico/list-remove-4.ico
vmsbase/inst/ico/referencer.png
vmsbase/inst/ico/games-endturn-2.png
vmsbase/inst/ico/internet-web-browser-3.png
vmsbase/inst/ico/address-book-new-4.png
vmsbase/inst/ico/insert-link-2.ico
vmsbase/inst/ico/user-busy.png
vmsbase/inst/ico/blockdevice-2.png
vmsbase/inst/ico/office-chart-ring.png
vmsbase/inst/ico/configure-2.png
vmsbase/inst/ico/document-properties.png
vmsbase/inst/ico/db_add.ico
vmsbase/inst/ico/folder-grey.png
vmsbase/inst/ico/db_remove.png
vmsbase/inst/ico/system-search-5.png
vmsbase/inst/ico/db_add.png
vmsbase/inst/ico/zim-2.png
vmsbase/inst/ico/media-eject-3.png
vmsbase/inst/ico/folder-saved-search.png
vmsbase/inst/ico/folder-red.png
vmsbase/inst/GPL
vmsbase/inst/GPL/LICENSE
vmsbase/inst/extdata
vmsbase/inst/extdata/Sta_met
vmsbase/inst/extdata/EU_CODES_MET.csv
vmsbase/inst/extdata/FAO_CODES_SPECIES.csv
vmsbase/inst/extdata/tacsat_format.rawvms
vmsbase/inst/extdata/EU_MET_DATA.csv
vmsbase/NAMESPACE
vmsbase/R
vmsbase/R/gui_lb_db_edit.R
vmsbase/R/gui_lb_db_create.R
vmsbase/R/gui_vms_save_bat.R
vmsbase/R/gui_vms_met_pred.R
vmsbase/R/gui_lb_met_dis.R
vmsbase/R/gui_vms_view_track.R
vmsbase/R/gui_dcf_ind.R
vmsbase/R/fun_vms_db_clean.R
vmsbase/R/rad2deg.R
vmsbase/R/gui_mark_fis_poi.R
vmsbase/R/reference_classes.R
vmsbase/R/gui_vms_db_stat.R
vmsbase/R/gui_vms_view_ping.R
vmsbase/R/lonsex2dec.R
vmsbase/R/gui_lb_met_edi.R
vmsbase/R/gui_out_grid.R
vmsbase/R/fun_view.R
vmsbase/R/knots2kmh.R
vmsbase/R/gui_lb_met_cla.R
vmsbase/R/gui_vms_db_select.R
vmsbase/R/saveRawLogBook.R
vmsbase/R/gui_vms_db_cut.R
vmsbase/R/internal.R
vmsbase/R/gui_vms_view_intrp.R
vmsbase/R/gui_vms_editraw.R
vmsbase/R/latsex2dec.R
vmsbase/R/gui_mixsou.R
vmsbase/R/gui_vms_viz_adv.R
vmsbase/R/gui_main.R
vmsbase/R/gui_vms_db_clean.R
vmsbase/R/vmsbase.R
vmsbase/R/gui_vms_db_dep.R
vmsbase/R/gui_vms_db_intr.R
vmsbase/R/gui_lb_db_stat.R
vmsbase/R/editFun.R
vmsbase/R/gui_join_lb_vms.R
vmsbase/R/zzz.R
vmsbase/R/saveRawVms.R
vmsbase/R/gui_vms_db_are.R
vmsbase/R/gui_lb_editraw.R
vmsbase/R/gui_vms_db_create.R
vmsbase/README.md
vmsbase/MD5
vmsbase/DESCRIPTION
vmsbase/man
vmsbase/man/log_DB.Rd
vmsbase/man/CountMap.Rd
vmsbase/man/gui_vms_db_clean.Rd
vmsbase/man/gui_lb_editraw.Rd
vmsbase/man/gui_lb_db_create.Rd
vmsbase/man/gui_join_lb_vms.Rd
vmsbase/man/gui_vms_db_are.Rd
vmsbase/man/polymap.Rd
vmsbase/man/Join2shp.Rd
vmsbase/man/vmsbase.Rd
vmsbase/man/gui_lb_met_cla.Rd
vmsbase/man/que_vms_DB.Rd
vmsbase/man/Assign_Area.Rd
vmsbase/man/gui_dcf_ind.Rd
vmsbase/man/vms_DB.Rd
vmsbase/man/gui_out_grid.Rd
vmsbase/man/latsex2dec.Rd
vmsbase/man/vms_File.Rd
vmsbase/man/log_Cla.Rd
vmsbase/man/gui_vms_view_intrp.Rd
vmsbase/man/harbCoo.Rd
vmsbase/man/gui_vms_save_bat.Rd
vmsbase/man/log_File.Rd
vmsbase/man/gui_main.Rd
vmsbase/man/gui_lb_db_edit.Rd
vmsbase/man/lonsex2dec.Rd
vmsbase/man/gui_vms_editraw.Rd
vmsbase/man/gui_vms_db_cut.Rd
vmsbase/man/gui_vms_viz_adv.Rd
vmsbase/man/gui_mark_fis_poi.Rd
vmsbase/man/gui_vms_view_track.Rd
vmsbase/man/gui_vms_db_stat.Rd
vmsbase/man/gui_vms_met_pred.Rd
vmsbase/man/gui_vms_db_create.Rd
vmsbase/man/saveRawVms.Rd
vmsbase/man/gui_vms_db_dep.Rd
vmsbase/man/kno2kmh.Rd
vmsbase/man/rad2deg.Rd
vmsbase/man/gui_lb_met_dis.Rd
vmsbase/man/gui_vms_view_ping.Rd
vmsbase/man/gui_vms_db_sel.Rd
vmsbase/man/plotNet.Rd
vmsbase/man/gui_lb_db_stat.Rd
vmsbase/man/gui_vmsdb_mixsou.Rd
vmsbase/man/gui_lb_met_edi.Rd
vmsbase/man/saveRawLogBook.Rd
vmsbase/man/bathymetry.Rd
vmsbase/man/gui_vms_db_intr.Rd