conv_l_yr: Convert 'census' data into long format

In vortexR: Post Vortex Simulation Analysis

Description

conv_l_yr converts the first element of the output from collate_yr (census) in long format. This can be then fed into downstream analysis (e.g. fit_regression)

Usage

conv_l_yr(
  data,
  npops_noMeta = 1,
  appendMeta = FALSE,
  project,
  scenario,
  yrs = c(1, 2),
  save2disk = TRUE,
  dir_out = "ProcessedData"
)

Arguments

data	The df 'census' from collate_yr
npops_noMeta	The total number of populations excluding the metapopulation, default: 1
appendMeta	Whether to calculate data for the metapopulation, default: FALSE
project	Vortex project name (used to name the output)
scenario	Vortex scenario name (used to name the output)
yrs	The year(s) that need to be retained in the output
save2disk	Whether to save the data as rda and csv, default: TRUE
dir_out	The local path to store the output. Default: ProcessedData

Details

yrs is used to indicate the years to be retained in the output. If more than one year is required, these may be requested defining a numeric vector, e.g. yrs=c(10, 20, 30). All simulated years can be included in the output by passing a numeric vector with all years. For example, assuming that 100 years were simulated, using yrs=1:100 would retain all 100 years in the output.

dir_out is created within the working directory unless a full path is provided.

Value

The census data.frame in long format

Examples

# Using Pacioni et al. example data. See ?pac.yr for more details.
data(pac.yr)
lyr.classic <- conv_l_yr(pac.yr[[1]] , yrs=c(60, 120), save2disk=FALSE)

vortexR documentation built on April 14, 2020, 7:23 p.m.