Files in wrProteo
Proteomics Data Analysis Functions
MD5
NAMESPACE
DESCRIPTION
R/readUniProtExport.R
R/foldChangeArrow2.R
R/cleanListCoNames.R
R/razorNoFilter.R
R/readFragpipeFile.R
R/readMaxQuantPeptides.R
R/isolNAneighb.R
R/extrSpeciesAnnot.R
R/readProtDiscovPeptides.R
R/readOpenMSFile.R
R/readIonbotPeptides.R
R/test2grp.R
R/readDiaNNPeptides.R
R/corColumnOrder.R
R/readFasta2.R
R/matrixNAinspect.R
R/writeFasta2.R
R/testRobustToNAimputation.R
R/readUCSCtable.R
R/getUPS1acc.R
R/inspectSpeciesIndic.R
R/readDiaNNFile.R
R/readWombatNormFile.R
R/fuseProteomicsProjects.R
R/exportAsWombatP.R
R/combineMultFilterNAimput.R
R/countNoOfCommonPeptides.R
R/readAlphaPeptFile.R
R/replMissingProtNames.R
R/readMassChroQFile.R
R/extractTestingResults.R
R/readProlineFile.R
R/readSdrf.R
R/VolcanoPlotW2.R
R/AAmass.R
R/exportSdrfDraft.R
R/AucRoc.R
R/readSampleMetaData.R
R/readProteomeDiscovererFile.R
R/plotROC.R
R/massDeFormula.R
R/readProteomeDiscovererPeptides.R
R/readMaxQuantFile.R
R/summarizeForROC.R
R/convAASeq2mass.R
R/shortSoftwName.R
R/removeSampleInList.R
R/readProtDiscovFile.R
R/matrixNAneighbourImpute.R
inst/doc/wrProteoVignette1.R
inst/doc/wrProteoVignette1.Rmd
inst/doc/wrProteoVignetteUPS1.Rmd
inst/doc/wrProteoVignetteUPS1.html
inst/doc/wrProteoVignetteUPS1.R
inst/doc/wrProteoVignette1.html
inst/extdata/tinyMC.RData
inst/extdata/tinyFragpipe1.tsv.gz
inst/extdata/tinyAlpaPeptide.csv.gz
inst/extdata/proteinGroupsMaxQuant1.txt.gz
inst/extdata/summary.txt.gz
inst/extdata/exampleProtDiscov1.txt.gz
inst/extdata/peptides_tinyMQ.txt.gz
inst/extdata/exampleProlineABC.csv.gz
inst/extdata/conta1.fasta.gz
inst/extdata/proteinGroups.txt.gz
inst/extdata/tinyIonbotFile1.tsv.gz
inst/extdata/pxd001819_PD_InputFiles.txt.gz
inst/extdata/UCSC_hg38_chr11extr.gtf.gz
inst/extdata/parameters.txt.gz
inst/extdata/pxd001819_PL.xlsx
inst/extdata/tinyPD_allProteins.txt.gz
inst/extdata/deUniProt_hg38chr11extr.tab
inst/extdata/OpenMS_tiny.csv.gz
inst/extdata/tinyDiaNN1.tsv.gz
inst/extdata/pxd001819_PD24_Proteins.txt.gz
inst/extdata/tinyWombCompo1.csv.gz
build/vignette.rds
vignettes/wrProteoVignette1.Rmd
vignettes/wrProteoVignetteUPS1.Rmd
man/removeSampleInList.Rd
man/matrixNAinspect.Rd
man/readProteomeDiscovererPeptides.Rd
man/corColumnOrder.Rd
man/massDeFormula.Rd
man/readOpenMSFile.Rd
man/readFragpipeFile.Rd
man/readSdrf.Rd
man/readMaxQuantFile.Rd
man/isolNAneighb.Rd
man/readAlphaPeptFile.Rd
man/shortSoftwName.Rd
man/dot-checkKnitrProt.Rd
man/dot-atomicMasses.Rd
man/plotROC.Rd
man/extractTestingResults.Rd
man/matrixNAneighbourImpute.Rd
man/dot-commonSpecies.Rd
man/foldChangeArrow2.Rd
man/readUniProtExport.Rd
man/readFasta2.Rd
man/test2grp.Rd
man/countNoOfCommonPeptides.Rd
man/exportSdrfDraft.Rd
man/readDiaNNFile.Rd
man/readWombatNormFile.Rd
man/readSampleMetaData.Rd
man/readProtDiscovererPeptides.Rd
man/writeFasta2.Rd
man/AucROC.Rd
man/readUCSCtable.Rd
man/dot-extrSpecPref.Rd
man/testRobustToNAimputation.Rd
man/dot-plotQuantDistr.Rd
man/readProlineFile.Rd
man/convAASeq2mass.Rd
man/AAmass.Rd
man/readProtDiscovPeptides.Rd
man/readProtDiscovFile.Rd
man/combineMultFilterNAimput.Rd
man/readIonbotPeptides.Rd
man/readProteomeDiscovererFile.Rd
man/readMassChroQFile.Rd
man/razorNoFilter.Rd
man/dot-checkSetupGroups.Rd
man/readMaxQuantPeptides.Rd
man/readDiaNNPeptides.Rd
man/getUPS1acc.Rd
man/dot-imputeNA.Rd
man/summarizeForROC.Rd
man/exportAsWombatP.Rd
man/inspectSpeciesIndic.Rd
man/cleanListCoNames.Rd
man/replMissingProtNames.Rd
man/fuseProteomicsProjects.Rd
man/VolcanoPlotW2.Rd
man/extrSpeciesAnnot.Rd
