update-Data-method: Updating 'Data' Objects

In 0liver0815/onc-crmpack-test: Object-Oriented Implementation of CRM Designs

Description

A method that updates existing Data object with new data.

Usage

## S4 method for signature 'Data'
update(
  object,
  x,
  y,
  ID = length(object@ID) + seq_along(y),
  new_cohort = TRUE,
  check = TRUE,
  ...
)

Arguments

object	(Data) object you want to update.
x	(number) the dose level (one level only!).
y	(integer) the DLT vector (0/1 vector) for all patients in this cohort. You can also supply numeric vectors, but these will then be converted to integer internally.
ID	(integer) the patient IDs. You can also supply numeric vectors, but these will then be converted to integer internally.
new_cohort	(flag) if TRUE (default) the new data are assigned to a new cohort.
check	(flag) whether the validation of the updated object should be conducted. Current implementation of this update method allows for updating the Data class object by adding a single dose level x only. However, there might be some use cases where the new cohort to be added contains a placebo and active dose. Hence, such update would need to be performed iteratively by calling the update method twice. For example, in the first call a user can add a placebo, and then in the second call, an active dose. Since having a cohort with placebo only is not allowed, the update method would normally throw the error when attempting to add a placebo in the first call. To allow for such updates, the check parameter should be then set to FALSE for that first call.
...	not used.

Value

The new, updated Data object.

Examples

# Create some data of class 'Data'.
my_data <- Data(
  x = c(0.1, 0.5, 1.5, 3, 6, 10, 10, 10),
  y = c(0, 0, 0, 0, 0, 0, 1, 0),
  doseGrid = c(0.1, 0.5, 1.5, 3, 6, seq(from = 10, to = 80, by = 2))
)

# Update the data with a new cohort.
my_data1 <- update(my_data, x = 20, y = c(0L, 1L, 1L))
my_data1

0liver0815/onc-crmpack-test documentation built on Feb. 19, 2022, 12:25 a.m.